Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G08f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2F950 Cluster: Surface antigen BspA-like; n=1; Trichom...    35   0.98 
UniRef50_A0CEL8 Cluster: Chromosome undetermined scaffold_172, w...    35   0.98 
UniRef50_Q6F1H0 Cluster: Putative uncharacterized protein; n=1; ...    34   1.7  
UniRef50_Q09779 Cluster: Uncharacterized protein C1D4.14; n=2; S...    32   9.2  

>UniRef50_A2F950 Cluster: Surface antigen BspA-like; n=1;
           Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
           - Trichomonas vaginalis G3
          Length = 546

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 335 SNNNLLFKGDDTFSACPLYKMVLLTSNLHSYMNKYFQSCS 216
           SNN + + GD  F+ C   + V+L  +L    N+ F SCS
Sbjct: 179 SNNPITYIGDSNFNGCSQLETVVLPKSLQGLGNQVFSSCS 218


>UniRef50_A0CEL8 Cluster: Chromosome undetermined scaffold_172,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_172,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 474

 Score = 35.1 bits (77), Expect = 0.98
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -3

Query: 231 LSIVLSSNYSNKTTKANELRLLKSQFKVYTHSSYMDVKENLRKVLFRTI 85
           L +V  SNY +   + N +R ++   K+YT  +  + K+ ++KVLFR I
Sbjct: 73  LILVAKSNYRSHIYQLNNIRFIQLN-KIYTFQTLQETKQIVQKVLFRDI 120


>UniRef50_Q6F1H0 Cluster: Putative uncharacterized protein; n=1;
           Mesoplasma florum|Rep: Putative uncharacterized protein
           - Mesoplasma florum (Acholeplasma florum)
          Length = 483

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 213 SNYSNKTTKANELRLLKSQFKVYTHSSYM 127
           +NYS K+T  N   LLK QF + THS YM
Sbjct: 392 NNYSQKSTFKNNKILLKKQFFIETHSLYM 420


>UniRef50_Q09779 Cluster: Uncharacterized protein C1D4.14; n=2;
            Schizosaccharomyces pombe|Rep: Uncharacterized protein
            C1D4.14 - Schizosaccharomyces pombe (Fission yeast)
          Length = 1628

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 305  DTFSACPLYKMVLLTSNLHSYMNKYFQSC 219
            D  +  P  K VLL S  H Y+  YF+SC
Sbjct: 1191 DLSAVLPYNKFVLLFSKWHKYLTSYFESC 1219


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 418,606,899
Number of Sequences: 1657284
Number of extensions: 6548006
Number of successful extensions: 13377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13377
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)