Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    32   0.060
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.0  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    25   9.0  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 305  DTFSACPLYKMVLLTSNLHSYMNKYFQSC 219
            D  +  P  K VLL S  H Y+  YF+SC
Sbjct: 1191 DLSAVLPYNKFVLLFSKWHKYLTSYFESC 1219


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 222 VLSSNYSNKTTKANELRLLKSQFKVYTHSSYMDVK 118
           VL S+Y ++  KA+ L+ L    ++   SSY+  K
Sbjct: 514 VLDSSYVSRKAKASTLKPLDFDVELRASSSYLRTK 548


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
 Frame = -3

Query: 183 NELRLLKSQFKVYTH--SSYMD-VKENLRKV 100
           N+++++KS+F+  TH  S+ ++ +KEN  K+
Sbjct: 48  NDIKVMKSEFQRLTHEKSTMLEKIKENQEKI 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,332
Number of Sequences: 5004
Number of extensions: 29539
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)