Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0562 - 10687827-10688126,10688228-10689022                       30   1.3  
03_01_0028 - 274231-275424                                             29   1.7  
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     28   5.2  
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044     27   6.9  
02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005...    27   6.9  
05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905...    27   9.1  

>09_02_0562 - 10687827-10688126,10688228-10689022
          Length = 364

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 335 SNNNLLFKGDDTFSACPLYKMVLLTSNLHSYMN 237
           SNNN+ F G D F   P   +VLL   LH + +
Sbjct: 241 SNNNIQFVGGDLFEFIPAADVVLLKCILHCWQH 273


>03_01_0028 - 274231-275424
          Length = 397

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 IGDKLKRYHHL*TASYCLKTHRNRASVGSGN 373
           +G  +   H+   A+YCL T RN   VG+GN
Sbjct: 227 VGSNICISHNSCNATYCLDTARNTWEVGNGN 257


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 521 TSSLKWNASMSHVFSCVQPAPSNY 450
           TS +K+  SM H F C  PAP NY
Sbjct: 142 TSHVKY-CSMCHCFVCDTPAPCNY 164


>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
          Length = 578

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 92  EQLHYYFIS*VSCKRNQCWLRPVALRRPSA 3
           EQ+HYY      C RN C   P+ L  P A
Sbjct: 359 EQMHYYSCLCGLCSRNICHKSPMPLGIPGA 388


>02_04_0597 -
           24198112-24198462,24199249-24199389,24200322-24200537,
           24200626-24201561,24201655-24201816,24202026-24202304,
           24202399-24203171,24206142-24207363
          Length = 1359

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 521 TSSLKWNASMSHVFSCVQPAPSNYKTLSR-QYQMFSTQ 411
           +SS KW   +S+  S   P+P   K+L+R  +  FS++
Sbjct: 111 SSSSKWECFLSYRLSVAHPSPDPSKSLARDSWHRFSSK 148


>05_03_0162 -
           9050981-9051003,9051141-9052273,9052388-9053310,
           9053560-9054615
          Length = 1044

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 167 NSLNSFAFVVLFE*FDESTIESIYSCN 247
           NS+ SFA +V  E +D   +ESI S N
Sbjct: 896 NSVESFASLVKLEVYDNPNLESITSLN 922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,149,239
Number of Sequences: 37544
Number of extensions: 173759
Number of successful extensions: 348
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)