Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    27   8.1  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    27   8.1  
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 478 RACSRLHRIIRRCHGNIKCFQLSTLHS 398
           RACS L+  +  CHG  KCF   T+ S
Sbjct: 41  RACSHLYYGVAACHG-CKCFFWRTVKS 66


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 478 RACSRLHRIIRRCHGNIKCFQLSTLHS 398
           RACS L+  +  CHG  KCF   T+ S
Sbjct: 41  RACSHLYYGVAACHG-CKCFFWRTVKS 66


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 478 RACSRLHRIIRRCHGNIKCFQLSTLHS 398
           RACS L+  +  CHG  KCF   T+ S
Sbjct: 41  RACSHLYYGVAACHG-CKCFFWRTVKS 66


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 231 LSIVLSSNYSNKTTKANELRLLKSQFKVYTHS 136
           LS+V  +NYS K T  N   +  S  KVYT S
Sbjct: 73  LSLVKYNNYSQKETVKNSEVVYSSLQKVYTSS 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,910,917
Number of Sequences: 27780
Number of extensions: 165948
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)