Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310G07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 54 1e-08
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 31 0.10
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 29 0.56
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 29 0.56
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 0.73
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.2
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 26 3.0
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 3.9
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 5.2
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 25 6.8
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 6.8
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 9.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.0
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 25 9.0
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 54.0 bits (124), Expect = 1e-08
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 AQLGGVVRMTISLTVIIIETTGQISNALPIIITLVVAKWIGDFFNE-GIYDIYIQLAGVP 177
A L R+ ++L VI+ E TG ++ ALP+++ +++KW+ D E IYD +IQ +P
Sbjct: 449 AFLSSTTRLVVALVVILFELTGALNIALPLMLATLISKWVSDSIIETSIYDAWIQFRNIP 508
Query: 178 LLP 186
P
Sbjct: 509 YFP 511
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 31.1 bits (67), Expect = 0.10
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 157 IQLAGVPLLPWEPPPLAHNVYASEVMSHPVFTLRTVENV-GHIVEILKLVSYNGFPVVDP 333
+Q A VPL P +P +N++A +V P +RT + IV + K S P +D
Sbjct: 622 LQNALVPLSPSQPHS-GNNIFADQVRQSPTSMIRTASGLTNRIVSVEKPASVMN-PEIDK 679
Query: 334 PLADDSEVTTYKRLRGLIL 390
+ D + T + L L
Sbjct: 680 QIQDQVALATNSAMSVLTL 698
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 438 VFIVYFILQQHYQLGAQYQSTKTFVCGY 355
VFIV IL ++QLG+ Y T +++C +
Sbjct: 470 VFIVSVILSIYFQLGSTYWVTLSYLCTF 497
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -1
Query: 500 RGYSFLNMSMSTWKFDHVVFAFSLYILFCNSTINWERSISPRRRLY 363
RGY ++ + + + ++ F+ +L++LF + I W R LY
Sbjct: 134 RGYGYVYDKLDEYGYFYLFFSIALFLLFSDFLIYWIHRALHHRWLY 179
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 28.3 bits (60), Expect = 0.73
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Frame = -1
Query: 347 SSARGGSTTGNPL*ETSLSISTM*PTFSTVRNV--NTGCDITSDAYTLC----ANGGGSH 186
+S G+ TGN TS+S T + N+ NT TS + + A GG
Sbjct: 75 ASGAFGNRTGNMNRNTSMSGYTFGSSNFVPYNLLSNTPSFTTSHSSSTTFVPPATMGGGL 134
Query: 185 GNSGTPASWMYIS*IPSLKKSPIHLATTSVIMMGRAFDICPVV 57
N +P+S +Y+ S ++S ++ S++ M D P++
Sbjct: 135 NNLSSPSSSLYLPGSASYQRSNSKNSSASILQMNTTLDDIPIL 177
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 459 IRPRRVRVFIVYFILQQHYQLGAQYQSTKTFVCGYFGIIS 340
++P + V + L Q+Y L A+++S K F YF +++
Sbjct: 1166 LQPSQTSVQHCCWALSQYYGLEAKFRSLKQFQSVYFSLLN 1205
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 459 IRPRRVRVFIVYFILQQHYQLGAQYQSTKTFVCGYFGIIS 340
++P + V + L Q+Y L A+++S K F YF +++
Sbjct: 1166 LQPSQTSVQHCCWALSQYYGLEAKFRSLKQFQSVYFSLLN 1205
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -1
Query: 497 GYSFLNMSMSTWKFDHVVFAFSLYILFCNSTINWERSISPRRRLY 363
GYS+L ++S + + + + L+++F + I W R +Y
Sbjct: 102 GYSYLYDNISDYGLKYFLCSLPLFVMFSDFGIYWAHRFLHHRYVY 146
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 475 PCPPGNSTTSCSRFHCI 425
PC P T + SRFHC+
Sbjct: 30 PCVPSVCTITYSRFHCL 46
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = -1
Query: 356 TSESSARGGSTTGNPL*ETSLSISTM*PTFSTVRNVNTGCDITSDAYTLCANGGGSHGNS 177
T S+ GS++G+ T+ S S++ S+ ++++G S +YT A+G +H +
Sbjct: 421 TISQSSTSGSSSGSSSASTTASSSSV----SSGSSISSGSSSMSTSYT-SASGSSAHSSG 475
Query: 176 GTPAS 162
+ S
Sbjct: 476 SSSGS 480
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 448 SCSRFHCIFYSATALSTGSAVSVHEDVCMWLLRNHQRGA 332
SC++FH ++Y + LS + LL+N+ G+
Sbjct: 125 SCAQFHLVYYMSRPLSNIFGLIATNHSLSLLLKNNYYGS 163
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 49 IIETTGQISNALPIII-TLVVAKWIGDFFNEGIYDIYIQLAGVPLLPWE 192
+ + TG +N + + T V ++W N D+++ L +P+ W+
Sbjct: 197 LYDFTGNANNTVVTPVETAVNSRWYQQQINRTDVDLFLLLGHIPVRDWD 245
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +1
Query: 322 VVDPPLADDSEVTTYKRLRGLILRSQLIVLLQNKIYNENANTTWSNFQVDMDM 480
V D L D YK + +I R + NK+ N ++ T D+D+
Sbjct: 677 VTDSTLVDTQSFHPYKVVTDMIFREDRRLAEVNKLLNYSSQITIMTEHFDVDL 729
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 290 YLSWFPTTGSRSLTRPSLMIPK*PHTNVFV 379
Y+S P+ GSR+ + PS + P T+ V
Sbjct: 519 YVSLGPSIGSRNQSTPSTLAPNVAETDALV 548
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +1
Query: 409 LLQNKIYNENANTTWSNFQVDMDMFRKEYPRFPSI 513
LL Y + N + + +F+KE+P PS+
Sbjct: 389 LLIRNTYVTSPTANLFNLEEESKLFKKEFPSLPSL 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,521
Number of Sequences: 5004
Number of extensions: 49284
Number of successful extensions: 164
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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