Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310G07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554... 112 2e-25
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726... 111 3e-25
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628... 107 5e-24
01_06_1528 + 38011391-38011635,38012366-38012566,38012659-380128... 105 3e-23
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 99 2e-21
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346... 92 3e-19
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 30 1.3
08_01_0070 + 490655-493165 29 1.7
01_06_0804 + 32118107-32118541 29 3.0
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 28 4.0
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 27 9.1
>04_04_1356 +
32854585-32854832,32854948-32855148,32855270-32855447,
32856389-32856651,32856800-32857040,32857317-32858456,
32858856-32858993
Length = 802
Score = 112 bits (269), Expect = 2e-25
Identities = 57/150 (38%), Positives = 89/150 (59%)
Frame = +1
Query: 1 AQLGGVVRMTISLTVIIIETTGQISNALPIIITLVVAKWIGDFFNEGIYDIYIQLAGVPL 180
A LGG +RMT+S+ V+I+E T + +++ L+++K + D FN IYD+ ++L G P
Sbjct: 533 ALLGGSMRMTVSVCVVILELTNNLLMLPLVMLVLLISKTVADAFNANIYDLLVKLKGFPY 592
Query: 181 LPWEPPPLAHNVYASEVMSHPVFTLRTVENVGHIVEILKLVSYNGFPVVDPPLADDSEVT 360
L P + S+V++ P+ +E VGHIV +L+ +NGFPVVD P DS V
Sbjct: 593 LEGHVEPYMRQLSVSDVVTGPLQAFNGIEKVGHIVHVLRTTGHNGFPVVDEPPFSDSPV- 651
Query: 361 TYKRLRGLILRSQLIVLLQNKIYNENANTT 450
L GL+LR+ L+VLL+ K + N + +
Sbjct: 652 ----LFGLVLRAHLLVLLRKKDFIPNCSAS 677
>02_04_0236 - 21170753-21170794,21171089-21172220,21172332-21172601,
21173043-21173305,21173406-21173492,21174149-21174326,
21174784-21174984,21175769-21176025
Length = 809
Score = 111 bits (267), Expect = 3e-25
Identities = 58/153 (37%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Frame = +1
Query: 7 LGGVVRMTISLTVIIIETTGQISNALPIIITLVVAKWIGDFFNEGIYDIYIQLAGVPLLP 186
LGG +RMT+S+ VI++E T ++ +++ L+++K I D FN+G+YD + + G+P +
Sbjct: 573 LGGTMRMTVSVCVILLELTNDLAMLPLVMLVLLISKTIADNFNKGVYDQIVVMKGLPYME 632
Query: 187 WEPPPLAHNVYASEVMSHPVFTLRTVENVGHIVEILKLVSYNGFPVVD-PPLADDSEVTT 363
P ++ A +V+S P+ T VE VG+IV L+ +NGFPVVD PPL + E
Sbjct: 633 AHAEPYMRHLVAGDVVSGPLITFSGVEKVGNIVHALRFTGHNGFPVVDEPPLTEAPE--- 689
Query: 364 YKRLRGLILRSQLIVLLQNKIYNENANTTWSNF 462
L GL+ RS L+VLL K++ ++ T +F
Sbjct: 690 ---LVGLVTRSHLLVLLNGKMFMKDQLKTSGSF 719
>03_05_0783 -
27662178-27662237,27662659-27662700,27662791-27662892,
27662991-27663147,27663230-27663307,27663391-27663446,
27663557-27663634,27663736-27663867,27663943-27664078,
27664252-27664403,27665317-27665391,27665476-27665535,
27665865-27665944,27666392-27666462,27666549-27666689,
27667467-27667555,27668657-27668731,27669303-27669401,
27669526-27669572,27669654-27669875,27671485-27671557,
27671650-27671823
Length = 732
Score = 107 bits (257), Expect = 5e-24
Identities = 59/146 (40%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Frame = +1
Query: 7 LGGVVRMTISLTVIIIETTGQISNALPIIITLVVAKWIGDFFNEGIYDIYIQLAGVPLLP 186
LGG +RMT+SL VI++E T + I++ L+++K +GDFFNEG+Y++ QL G+PLL
Sbjct: 463 LGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDFFNEGLYEVQAQLRGIPLLD 522
Query: 187 WEPPPLAHNVYASEV-MSHPVFTLRTVENVGHIVEILKLVSYNGFPVVDPPLADDSEVTT 363
P + N+ A + + V +L V + I+ +L+ +NGFPVVD +S V
Sbjct: 523 SRPKQVMRNMSAKDACKNQKVVSLPRVSRIVDIISVLRSNKHNGFPVVDRGQNGESLVI- 581
Query: 364 YKRLRGLILRSQLIVLLQNKIYNENA 441
GLILRS L+VLLQ+K+ +N+
Sbjct: 582 -----GLILRSHLLVLLQSKVDFQNS 602
>01_06_1528 +
38011391-38011635,38012366-38012566,38012659-38012836,
38012946-38013208,38013380-38013649,38013753-38014950
Length = 784
Score = 105 bits (251), Expect = 3e-23
Identities = 54/142 (38%), Positives = 89/142 (62%), Gaps = 1/142 (0%)
Frame = +1
Query: 7 LGGVVRMTISLTVIIIETTGQISNALPIIITLVVAKWIGDFFNEGIYDIYIQLAGVPLLP 186
LGG +RMT+S+ VI++E T + I++ L+V+K + D FN+G+Y+ +++ G+P L
Sbjct: 542 LGGTMRMTVSVCVILLELTNDLLLLPLIMLVLLVSKTVADCFNKGVYEQMVRMKGLPYLE 601
Query: 187 WEPPPLAHNVYASEVMSHPVFTLRTVENVGHIVEILKLVSYNGFPVV-DPPLADDSEVTT 363
P ++ A +V+S P+ +VE+VG +V+ L+ +NGFPV+ D P A + E
Sbjct: 602 AHAEPCMRSLVAGDVVSAPLIAFSSVESVGTVVDTLRRTGHNGFPVIEDAPFAPEPE--- 658
Query: 364 YKRLRGLILRSQLIVLLQNKIY 429
L GL+LRS L+VLL+ K +
Sbjct: 659 ---LCGLVLRSHLLVLLRAKTF 677
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 99.1 bits (236), Expect = 2e-21
Identities = 51/139 (36%), Positives = 81/139 (58%)
Frame = +1
Query: 7 LGGVVRMTISLTVIIIETTGQISNALPIIITLVVAKWIGDFFNEGIYDIYIQLAGVPLLP 186
LGG +RMT+S+ VII+E T + +++ L+++K + D FN IYD+ + L G+P L
Sbjct: 517 LGGTLRMTVSVCVIILELTNNLLLLPLVMLVLLISKTVADSFNSSIYDLILNLKGLPHLD 576
Query: 187 WEPPPLAHNVYASEVMSHPVFTLRTVENVGHIVEILKLVSYNGFPVVDPPLADDSEVTTY 366
P + +V++ P+ + VE VGHIV L+ ++ FPVVD P + V
Sbjct: 577 GHAEPYMRQLTVGDVVAGPLRSFNGVEKVGHIVHTLRTTGHHAFPVVDEPPFSPAPV--- 633
Query: 367 KRLRGLILRSQLIVLLQNK 423
L GL+LR+ L+VLL+ +
Sbjct: 634 --LYGLVLRAHLLVLLKKR 650
>12_02_0156 -
14532000-14532098,14532669-14534330,14534445-14534660,
14534730-14534907,14535065-14535276
Length = 788
Score = 91.9 bits (218), Expect = 3e-19
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Frame = +1
Query: 1 AQLGGVVRMTISLTVIIIETTGQISNALPI-IITLVVAKWIGDFFNEGIYDIYIQLAGVP 177
A + G +RMT+SL VI +E T + LPI + L++AK +GD FN IY+I + L G+P
Sbjct: 532 ALMSGSMRMTVSLVVIFLELTNNLL-LLPITMFVLLIAKTVGDAFNPSIYEIILDLKGLP 590
Query: 178 LLPWEPPPLAHNVYASEVMSHP--VFTLRTVENVGHIVEILKLVSYNGFPVVDPPLADDS 351
L +P P ++ E+ + L+ VE V +VE L+ +NGFPV+D P S
Sbjct: 591 FLEAKPEPWMKDLTVGELAAAKPRAVALQVVERVSTVVEALRATRHNGFPVLDRPRPGVS 650
Query: 352 EVTTYKRLRGLILRSQLIVLLQNK 423
E L GL+LRS L+ L+ +
Sbjct: 651 E------LHGLVLRSHLVAALRKR 668
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 143 IPSLKKSPIHLATTSVIMMGRAFDICPVVSI 51
+PS ++S LAT+ ++ RAF++ P++ I
Sbjct: 708 LPSRRRSLFTLATSMIMFFSRAFNVAPLIPI 738
>08_01_0070 + 490655-493165
Length = 836
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 284 TM*PTFSTVRNVNTGCDITSDAYTLCANGGGSHG 183
TM +TV N ++ C + LC NGGG G
Sbjct: 320 TMPGACATVGNCSSSCGFVPGSAALCGNGGGEGG 353
>01_06_0804 + 32118107-32118541
Length = 144
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 242 GCDITSDAYTLCANGGGSHGN 180
GCD SD++TL G G HG+
Sbjct: 67 GCDADSDSFTLGHGGEGCHGD 87
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Frame = -2
Query: 481 TCPCPPGNSTTSCSRFHC----IFYSATALSTGSAVSVHEDV--CMWLLRNHQR 338
TC CPPG S R C F A + TG +V V V C WL Q+
Sbjct: 340 TCVCPPGTSGNWTDRNGCRPKDNFPLALKVVTGVSVGVFLSVFMCFWLYLGLQK 393
>10_08_0585 -
18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 503 NRGYSFLNMSMSTWKFDHVVFAFSLYILFCNSTINWERSI 384
+R S+LN+++ ++ + F+ +L CN +WERS+
Sbjct: 419 SRSNSYLNVAVFVAQYKEYLHPFAEELL-CNKISHWERSL 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,373
Number of Sequences: 37544
Number of extensions: 341010
Number of successful extensions: 1164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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