Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   5.8  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +1

Query: 19  VRMTISLTV---IIIETTGQISNALPII 93
           V + +SLTV   ++ ET  Q+S+A+P++
Sbjct: 230 VTILLSLTVFLNLVAETLPQVSDAIPLL 257


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +1

Query: 19  VRMTISLTV---IIIETTGQISNALPII 93
           V + +SLTV   ++ ET  Q+S+A+P++
Sbjct: 230 VTILLSLTVFLNLVAETLPQVSDAIPLL 257


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +1

Query: 19  VRMTISLTV---IIIETTGQISNALPII 93
           V + +SLTV   ++ ET  Q+S+A+P++
Sbjct: 230 VTILLSLTVFLNLVAETLPQVSDAIPLL 257


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = +1

Query: 19  VRMTISLTV---IIIETTGQISNALPII 93
           V + +SLTV   ++ ET  Q+S+A+P++
Sbjct: 298 VTILLSLTVFLNLVAETLPQVSDAIPLL 325


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 382 LILRSQLIVLLQNKIYNENANTTWS 456
           ++L +  + L QN + N N  T WS
Sbjct: 370 VLLSNNDVYLYQNTMSNNNQRTEWS 394


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 382 LILRSQLIVLLQNKIYNENANTTWS 456
           ++L +  + L QN + N N  T WS
Sbjct: 408 VLLSNNDVYLYQNTMSNNNQRTEWS 432


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/50 (20%), Positives = 24/50 (48%)
 Frame = -3

Query: 519 LIYRRESWIFLPEHVHVHLEIRPRRVRVFIVYFILQQHYQLGAQYQSTKT 370
           L YRRE+W+   E    + +++ + +  + +Y      ++     + +KT
Sbjct: 36  LQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKT 85


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 199 PLAHNVYASEVMSHPVFTLRT 261
           P+ +N+Y S ++SH ++ + T
Sbjct: 263 PVTNNLYYSPLLSHGLYYVDT 283


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 417 LQQHYQLGAQYQSTKTFVCGYFGIISEGRVNDREPVVGNQLKY 289
           L + Y+L A+  +  TF+      + +G  ND    + ++L Y
Sbjct: 173 LLRQYRLRAEDINMNTFIANIAVDLGKGGCNDAFAYMSDELGY 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,781
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)