Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G06f
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   8.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    24   8.2  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 279 NFRDGNAVMSIPGP 238
           NF+ GN VMSI GP
Sbjct: 514 NFQTGNEVMSILGP 527


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 28  GWFEGGDHFHDGH*KFSGSSESYRSHP 108
           G F G  H H GH  F G    +   P
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGP 237


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 239 GPGIDMTAFPSLKFEEPKL 295
           G  +D   FPS+ FE+P L
Sbjct: 246 GTEVDSERFPSVDFEDPSL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,528
Number of Sequences: 5004
Number of extensions: 27954
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)