Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G06f
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)           51   4e-07

>SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)
          Length = 175

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
 Frame = +2

Query: 20  SKLVGLRAATTSMMVTRNL-------AAAQKATDPIQQLFLDKIREYKQKSAGGKVPDAS 178
           S+L     +T S+++ RN+       A   K  DPIQ+LF++K+  YKQKS GGK+ D++
Sbjct: 81  SRLAVASPSTCSIVLRRNIGTTYAAMAKMDKNADPIQRLFVEKLEAYKQKSKGGKLIDST 140

Query: 179 PAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKF 280
           P +             +YGG    ++  FP   F
Sbjct: 141 PEMESEIEKEREQIRKRYGGQ---NLEEFPKFDF 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,411,737
Number of Sequences: 59808
Number of extensions: 221656
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)