Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310G05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 1.7
05_03_0675 + 16851581-16851761,16853192-16853397 29 2.3
10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131 29 3.0
04_03_0573 + 17329365-17330440,17330505-17331201 29 3.0
02_01_0144 - 1038547-1039650 29 3.0
03_05_0032 + 20043252-20044361 28 4.0
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 5.2
05_01_0242 + 1804183-1806096 28 5.2
03_06_0768 - 36132733-36133035 27 6.9
11_01_0412 + 3131673-3131903,3133192-3133971 27 9.1
08_02_1271 - 25762750-25764276 27 9.1
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279... 27 9.1
06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531 27 9.1
04_03_0571 - 17269005-17269927,17270433-17270688,17272492-17273301 27 9.1
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90... 27 9.1
03_05_0403 - 23855059-23855075,23855134-23855162,23855318-238553... 27 9.1
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/71 (29%), Positives = 27/71 (38%)
Frame = +2
Query: 308 RSLFAYPSSWPGDAMRCDTKRYCAPDSCYECRAGKV*AITRRVAGSRRTRPLAAARVCGL 487
R L W D R + AP C E + TRR + +R T ++ V GL
Sbjct: 518 RFLLVLDDMWE-DRDRKGWENLLAPLKCNEATGCMILVTTRRTSVARMTGTMSKIDVNGL 576
Query: 488 DRNTDWSYTSA 520
D WS A
Sbjct: 577 DETEFWSLFKA 587
>05_03_0675 + 16851581-16851761,16853192-16853397
Length = 128
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 168 PLLLNCQNYIPNNVEEESASCRIRHG 91
PLL + +IP +EEE A R R G
Sbjct: 93 PLLTSPNQFIPEGIEEEMACARFRRG 118
>10_08_1013 - 22239396-22239536,22240629-22240715,22240787-22241131
Length = 190
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 269 PSDPKLHVCFCFVRSLFAYPSSWPGDAMRC 358
P D CFC+V + A SSW G+ C
Sbjct: 137 PHDDHCEQCFCYVCDVPAPCSSWKGEKGHC 166
>04_03_0573 + 17329365-17330440,17330505-17331201
Length = 590
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 356 CDTKRYCAPDSCYECRAGKV*AITRRVAGSRR 451
C +CAP+ Y CR GKV R + S R
Sbjct: 541 CSDDSHCAPEKGYFCRPGKVFTAARVCSPSPR 572
>02_01_0144 - 1038547-1039650
Length = 367
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -2
Query: 520 RASIAPVSIAIQPTDPSCSERPRPTRTSDATRYRSNLSRAT 398
RA+ P+++ +PT S S+ P P R S+ R+R ++A+
Sbjct: 9 RAAKLPLAVLAKPTHASASQPPAPPRPSN-PRHRKTPAKAS 48
>03_05_0032 + 20043252-20044361
Length = 369
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 356 CDTKRYCAPDSCYECRAGKV 415
C +CAP+ Y CR GKV
Sbjct: 340 CSQDAHCAPEQGYVCRPGKV 359
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -2
Query: 217 INYVSLTTPVLAVS---LNTATFKLPKLYTQQRGRRVCLVPNSARGNCRD 77
I Y + + P L ++ L+ FKL L RG V V A G+CRD
Sbjct: 472 IQYSTSSVPQLTLNQLDLSLQNFKLHTLNGAIRGNLVSFVAADASGSCRD 521
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 484 PTDPSCSERPRPTRTS-DATRYRSNLSRATFVAG 386
P DPS +ERPRP S D+ R+ R AG
Sbjct: 32 PADPSRTERPRPDPGSGDSARHHEATVRRLAAAG 65
>03_06_0768 - 36132733-36133035
Length = 100
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 112 LVPNSARGNCRDTGYAGAVCHTSVHPLSCQA 20
L+ +ARGNCRD AG + LSC +
Sbjct: 21 LLATAARGNCRDECLAGCQGWAIICHLSCNS 51
>11_01_0412 + 3131673-3131903,3133192-3133971
Length = 336
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -2
Query: 496 IAIQPTDPSCSERPRPTRTSDATRYRSNLSRATFVAGIRRTVSLRVASHRIARPGRRVS 320
I + T P +P P S TR R R+ + + T++ AS+R RPG S
Sbjct: 163 IGVNTTTPPLDPKPSPLLPSPLTRSRGCRHRS--MPSGQETLATTAASNRNHRPGATFS 219
>08_02_1271 - 25762750-25764276
Length = 508
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +2
Query: 356 CDTKRYCAPDSCYECRAGKV---*AITRRVAG 442
C +C+P+ Y CR G V + RRVAG
Sbjct: 471 CSEDEHCSPEKGYLCRPGMVYRDARVCRRVAG 502
>06_02_0060 -
11026885-11026929,11027732-11027756,11027886-11027992,
11028023-11028103,11028301-11028405,11031495-11031762,
11031854-11032056
Length = 277
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 479 RPELQREASSYANQRRDALSLKPFPRDIRS 390
+P L + +SYA R DA S P P DI +
Sbjct: 24 QPSLLADWNSYAASRPDASSSSPLPFDIEA 53
>06_01_0858 + 6503701-6504069,6505114-6505231,6505485-6505531
Length = 177
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -2
Query: 148 KLYTQQRGRRVCLVPNSARGNCRDTGY-----AGAVCHTSVHPLSC 26
+L ++RG ++C++P SA + G+ A A CH + H C
Sbjct: 102 RLAKRRRGPKLCILPESAFADTDLFGWHFSQQAAANCHAAEHAACC 147
>04_03_0571 - 17269005-17269927,17270433-17270688,17272492-17273301
Length = 662
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 356 CDTKRYCAPDSCYECRAGKV 415
C +CAP+ Y CR GKV
Sbjct: 603 CSDDSHCAPELGYFCRPGKV 622
>04_01_0083 +
904473-905167,905247-905347,905902-905994,907322-907968
Length = 511
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 389 CYECRAGKV*AITRRVAGSRRTRPLAAARVCG 484
CYECRA V ++RR R R L A CG
Sbjct: 219 CYECRAINVEPMSRRYP---RPRELCACSQCG 247
>03_05_0403 -
23855059-23855075,23855134-23855162,23855318-23855375,
23855667-23856123
Length = 186
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = -2
Query: 514 SIAPVSIAIQPTDPSCSERPRPTRTSDATRYRSNLSRATFVAGIRRT--VSLRVASHR-I 344
+I+P I P+ S R R R+R LS AT RT S VA R +
Sbjct: 33 TISPPPGLIDYLPPAASPHIRLPRQQQRLRWRRTLSMATTTRRRSRTSAASAAVADERGV 92
Query: 343 ARPGRRVSEKRTNKTKTN 290
+ GR + +R + +T+
Sbjct: 93 SGDGRGRARRRRRRMRTS 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,757,241
Number of Sequences: 37544
Number of extensions: 235566
Number of successful extensions: 697
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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