Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36155| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)           29   3.1  
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  28   5.4  
SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_37543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_42589| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)               27   7.1  
SB_52092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_36155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 181 VSLNTATFKLPKLYTQQRGRRVCLVPNSARGNCRDTGYAGAVCHTSVH 38
           +SL +   + P L +Q  GRR+ +V    +GN   T Y+ AV H S +
Sbjct: 27  LSLTSVIGREPVL-SQWYGRRLLIVLRKQKGNAYSTRYSEAVTHPSTY 73


>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
          Length = 969

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +3

Query: 78  SRQLPRAEFGTRQTLLPRCWVYSFGNLKVAVFNETASTGVVSET*FIC 221
           SR+   +  G +  L  R W Y F NLK AV +E  ST  V E+   C
Sbjct: 138 SRKTSLSSTGRKSDLRARYWSYLFDNLKRAV-DEIYSTCEVDESTVEC 184


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 181 VSLNTATFKLPKLYTQQRGRRVCLVPNSARGNCRDTGYAGAV 56
           V++ TAT  L  LY+Q+    +C+  +   G    TG  G V
Sbjct: 46  VAIKTATLILVALYSQEMSPSICVEASEKLGAVVGTGVFGVV 87


>SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 284 LHVCFCFVRSLFAYPSSWPGDAMRCDTKRYCAPDSCYECRAGKV*AI 424
           L VCF FV     YP +WP   + C T  Y   D  Y    G + AI
Sbjct: 95  LLVCFPFVVIRTEYPYAWPFGRLICKTV-YPLADIFYGVEIGCITAI 140


>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 488 PTHRPELQREASSYANQRRDALSLKPFPRDIRS 390
           P+HRP  +   S + N+  D  SL+ +P D  S
Sbjct: 565 PSHRPVARSPRSDHENRPMDKQSLRGYPMDRES 597


>SB_37543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 155 IAKTIYPTTWKKSLPR 108
           +   IYP TWKK LPR
Sbjct: 452 LVSLIYPLTWKKFLPR 467


>SB_42589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = -2

Query: 514 SIAPVSIAIQPTDPSCSERPRPTRTSDATRYRSNLSRATFVAGIRR-------TVSLRVA 356
           +I PVS +  P DP   ERP P R S  + Y  +   +  V   RR       T   R+A
Sbjct: 55  TIPPVSNSCSPGDPLVLERP-PPRWSSNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLA 113

Query: 355 SHRIARPGRRVSEKRTNKTKTNVK 284
           +H      R   E RT++    ++
Sbjct: 114 AHPPFASWRNSEEARTDRPSQQLR 137


>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
          Length = 1508

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = -2

Query: 193 PVLAVSLNTATFKLPKLYTQQRGRRVCLVPNSARGNCRDTGYAGAVCHTSVHPLSCQAYH 14
           P   ++L+    + PKL  QQ+ ++    P   R N R + Y+     + + P     Y 
Sbjct: 343 PYAVLTLSVPVIEEPKLIPQQKTKKALKGPPHQRHNARKSAYSSIKTMSQLLPGGQYTYF 402

Query: 13  SV 8
            V
Sbjct: 403 EV 404


>SB_52092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 488 PTHRP-ELQREASSYANQRRDALSLKPFPRDIRSRNQA 378
           PT  P ELQ+ + S + +   ++SL+P  RD+   N +
Sbjct: 127 PTSTPRELQKSSGSASQEGMPSVSLEPLQRDMARMNNS 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,554,327
Number of Sequences: 59808
Number of extensions: 272206
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)