Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa...    28   3.3  
At5g56470.1 68418.m07048 FAD-dependent oxidoreductase family pro...    28   4.4  
At2g46740.1 68415.m05832 FAD-binding domain-containing protein s...    27   7.7  

>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 508

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -1

Query: 494 CDPTHRPELQREASSYANQRRDALSLKPFPRDIRS-RNQAHSIASCRIASHRPARTTG 324
           C P   P +     SYA+  +  L  +   +D +  R+ AHS+    I  HR +   G
Sbjct: 385 CLPLSSPSIDGAEQSYASNSKAPLLGRSNKQDKKKGRDHAHSLRGIEIEEHRKSNDRG 442


>At5g56470.1 68418.m07048 FAD-dependent oxidoreductase family
           protein contains TIGRfam TIGR01677: plant-specific
           FAD-dependent oxidoreductase
          Length = 252

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 356 CDTKRYCAPDSCYECRAGKV 415
           C    +CAP+  Y CR GKV
Sbjct: 221 CSDDSHCAPNKGYMCRPGKV 240


>At2g46740.1 68415.m05832 FAD-binding domain-containing protein
           strong similarity to At1g32300, At5g56490, At2g46750,
           At2g46760; contains PF01565: FAD binding domain
          Length = 590

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 356 CDTKRYCAPDSCYECRAGKV 415
           C    +CAP   Y CR GKV
Sbjct: 559 CSDDAHCAPSKGYLCRPGKV 578


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,677,530
Number of Sequences: 28952
Number of extensions: 167289
Number of successful extensions: 433
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)