Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310G02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 31 0.14
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 31 0.14
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 31 0.14
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 31 0.14
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 28 0.73
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.97
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 1.3
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 3.0
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 3.9
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 25 5.2
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 25 6.8
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 25 6.8
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe... 25 9.0
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 9.0
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 243 SIICSSYARIDAGYFAELFSVQVQVN-GFKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHI 67
S+I S + I GYF F+V +N GF+++F++ +T G + + QL + +I
Sbjct: 275 SLILSLFL-ISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNI 333
Query: 66 IF 61
IF
Sbjct: 334 IF 335
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 243 SIICSSYARIDAGYFAELFSVQVQVN-GFKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHI 67
S+I S + I GYF F+V +N GF+++F++ +T G + + QL + +I
Sbjct: 275 SLILSLFL-ISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNI 333
Query: 66 IF 61
IF
Sbjct: 334 IF 335
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 243 SIICSSYARIDAGYFAELFSVQVQVN-GFKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHI 67
S+I S + I GYF F+V +N GF+++F++ +T G + + QL + +I
Sbjct: 275 SLILSLFL-ISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNI 333
Query: 66 IF 61
IF
Sbjct: 334 IF 335
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 30.7 bits (66), Expect = 0.14
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 243 SIICSSYARIDAGYFAELFSVQVQVN-GFKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHI 67
S+I S + I GYF F+V +N GF+++F++ +T G + + QL + +I
Sbjct: 275 SLILSLFL-ISFGYFFTFFAVFSVINYGFRHKFTVAWWAMTFPLGTMSISNTQLSKVTNI 333
Query: 66 IF 61
IF
Sbjct: 334 IF 335
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 28.3 bits (60), Expect = 0.73
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +1
Query: 31 VHGNQEVEVLKDNVHNPFQLVVDYQTNTLFFSYSSLSQGKTVLKSVYLNLNTKEFGEISG 210
+ G + + PF ++V T+ FF L GK+V K + L E +
Sbjct: 351 LEGTIAIPLTSSKTETPFVVLV--HTSGQFFYLDFLLDGKSV-KGLSLQALDLEIND-DF 406
Query: 211 INSGIATAYDRSKHVVYLGGQ 273
+ SGI A +++V+LG Q
Sbjct: 407 LKSGITCAVPAGENLVFLGSQ 427
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 0.97
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 34 HGNQEVEVLKDNVHNPFQLVVDYQTNT-LFFSYSSLSQGKTVLKSVYLNLNTKEFGEISG 210
H ++V++ V + V Y N L F S S GKT L S ++N NT +
Sbjct: 396 HNTDALKVMRKRVSQN-RKVSKYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTV 454
Query: 211 INS 219
+NS
Sbjct: 455 VNS 457
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 27.5 bits (58), Expect = 1.3
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 58 LKDNVHNPFQLVVDYQTNTLFFSYSSLSQGKTVLKSVYLN--LNTKEFGEISGINSGIAT 231
++DN +P +L Y TN L L + + VL ++ K F + N+G+ T
Sbjct: 482 VEDNTLSPEELSRTYVTNELSSPEQVLQKARRVLAEEIIHDPQFRKSFRD-KLYNAGVVT 540
Query: 232 AYDRSKHVVYLGGQDGIYTFDY 297
K V +G + Y F Y
Sbjct: 541 VLATQKGVRKIGSEHPYYEFKY 562
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 306 ICKEFACDKLQHLANV 353
+CK CD+L HL NV
Sbjct: 865 VCKAVRCDELMHLKNV 880
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -3
Query: 516 SGVSKIYIVFLADSNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMKHL 346
SGV++I++ + S F F SYL +D I + ++ + G M L
Sbjct: 1505 SGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFL 1561
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 513 GVSKIYIVFLADSNQSCFDVGEFRYRSY-LTVRIDKRFFV 397
G S YI F+A + Q+C V +R Y L V I +F V
Sbjct: 363 GFSSAYISFVASTLQACVKVISTTHREYHLAVFIFIQFLV 402
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 471 QSCFDVGEFRYRSYLTVRIDK 409
Q CF V F YR + V +DK
Sbjct: 69 QDCFTVAHFWYRILIKVGVDK 89
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 97 DYQTNTLFFSYSSLSQGKTVLKSVYLNLNTKEF 195
+Y LFF+ S +T +SV +N KEF
Sbjct: 140 NYGVALLFFTSSKNDDSETFSRSVLMNQELKEF 172
>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 286 TFDYTTKSAKNLRVT-SYSIWQMFHCPVHGLYFTTF 390
+FD N++V Y W+ C ++ LY TTF
Sbjct: 125 SFDGRAVLYPNMKVLRDYLHWRQVDCHINNLYNTTF 160
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 385 TFNPDEKAFVYSYGQVGPVPELTDIKTRLIAV 480
TFNP+ + ++ +VGP L + + L A+
Sbjct: 4 TFNPEVRLAIHDLDKVGPAIPLENYEAALRAI 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,121
Number of Sequences: 5004
Number of extensions: 49439
Number of successful extensions: 165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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