Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566...    30   0.98 
04_04_0735 - 27667780-27667887,27668116-27668211,27668346-276684...    29   1.7  
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499...    29   2.3  
10_08_0328 - 16805296-16806121,16806493-16807274                       29   3.0  
08_02_1055 + 23986258-23986459,23986734-23986825,23987389-239874...    28   5.2  
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198...    27   6.9  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    27   9.1  
03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805     27   9.1  

>05_04_0376 -
           20754386-20755392,20755683-20756320,20756433-20756627,
           20757730-20757795,20757942-20758007,20758402-20758445
          Length = 671

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 94  VDYQTNTLFFSYSSLSQGKTVLKSVYLNLNTKEFGEISGINSGIATAYDRSKH 252
           VD Q   ++ +  +L+ G   LK   LN N+ E+G  + +  G A +  R +H
Sbjct: 145 VDVQWEDVYKALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEH 197


>04_04_0735 -
           27667780-27667887,27668116-27668211,27668346-27668455,
           27668545-27668648,27669279-27669556
          Length = 231

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
 Frame = -3

Query: 477 SNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMKHL----PD---AVTCHTQ 319
           S  +   + E   + Y  +R D RF VR++  +++ V   ++HL    PD    V     
Sbjct: 145 STGNALALSELNLKFYTPLRKDDRFVVRMKVVKIKGVRIIVEHLIETLPDRKLVVDAKAT 204

Query: 318 ILC---RFRCVIKCIYPILSTKVHNVFAS 241
            +C   ++R     ++P LSTK+H  F S
Sbjct: 205 AVCLDNKYRPTR--VFPELSTKLHQFFLS 231


>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
            30550422-30550538,30550873-30551111,30552279-30552365,
            30552732-30552831,30553319-30553532,30553617-30553777
          Length = 1349

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
 Frame = -3

Query: 438  RSYLTVR--IDKRFFVRIESREVEAVDGTMKHLPDAVTCHTQILCRFRCVIKCIYPILST 265
            R+ L V+  ++  F  RI  R  E V  T+  L + V C+++I      + +C  PI+  
Sbjct: 1089 RNLLAVKKDLEPEFSCRIIQRIHENVPETVVALDERVECNSKIAVALSLMDECFLPIVDQ 1148

Query: 264  KVH-NVFASII--C-SSYARID 211
            +   N+  +++  C S++ R+D
Sbjct: 1149 RTGINLIRNVVYNCGSNFVRMD 1170


>10_08_0328 - 16805296-16806121,16806493-16807274
          Length = 535

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 199 EISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNL 321
           + SG  S + T+Y+ S H VYL G      F  T +  K L
Sbjct: 407 DFSGEISALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTL 447


>08_02_1055 +
           23986258-23986459,23986734-23986825,23987389-23987412,
           23987932-23988068,23988533-23988692,23988997-23989006,
           23989449-23989726,23990059-23990136
          Length = 326

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +1

Query: 175 NLNTKEFGEISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNLRVTSYSIWQMF 354
           N+  ++    +G      T  D    V+Y G   G+ T            V S+SIW +F
Sbjct: 104 NMKHRDIRRFAGTVPNATTTGDIDSMVMYAGQGVGLITEIIPASEV----VKSWSIWHVF 159

Query: 355 HCP 363
            CP
Sbjct: 160 FCP 162


>08_01_0238 -
           1988688-1988830,1988989-1989257,1989339-1989600,
           1989693-1989805,1990560-1990594,1990771-1990878,
           1992178-1992483
          Length = 411

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 282 YPILSTKVHNVFASIICSSYARI 214
           YP+  T +H VF+S++C +  +I
Sbjct: 114 YPVALTLLHMVFSSVVCFAITKI 136


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 384 REVEAVDGTMKHLPDAVTCHTQILCR 307
           REVEA++  ++H  D + CH  +  R
Sbjct: 882 REVEALEDAIRHSADLLPCHPAVEVR 907


>03_03_0111 + 14527548-14528543,14529158-14529337,14529428-14529805
          Length = 517

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = +1

Query: 34  HGNQEVEVLKDNVHNPFQLVVDYQTNTLFFSYSSLSQGKT---VLKSVYLNLNTKEFGEI 204
           H + EVE++KD    P    +  Q     +  +S+    T    LK + LN+      E 
Sbjct: 336 HDSAEVELIKDIPQLPHATSLSLQVFAQVYDIASVLCLLTRCKFLKHLELNIKYCSMAEY 395

Query: 205 SGINSGIATAYDRSKHVVYL 264
               +GI T   R  H++ L
Sbjct: 396 CKRPTGIGTQNQRDHHIISL 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,805
Number of Sequences: 37544
Number of extensions: 290776
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)