Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)        32   0.25 
SB_28652| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_25562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)                  29   3.1  
SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)           28   4.1  
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   28   5.4  
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)                 27   7.1  
SB_43227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_28895| Best HMM Match : p450 (HMM E-Value=0)                        27   9.4  
SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)
          Length = 517

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +1

Query: 199 EISGINSGIATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNLRVTSYSIWQMF 354
           E + I  GI       K V+   G D   T D T  SA N R  +Y+IW MF
Sbjct: 455 ECATIGGGIRDCQKMGKKVIISLGGD---TCDGTLGSAANARALAYNIWNMF 503


>SB_28652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 121 KTGCWFGSRLPVGMDCAHYLLVLPLLGF 38
           K+G +F SRLPV   C H L+VL + GF
Sbjct: 59  KSG-FFNSRLPVSKACKHGLVVLAIPGF 85


>SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 121 KTGCWFGSRLPVGMDCAHYLLVLPLLGF 38
           K+G +F SRLPV   C H L+VL + GF
Sbjct: 15  KSG-FFNSRLPVSKACKHGLVVLAIPGF 41


>SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 121 KTGCWFGSRLPVGMDCAHYLLVLPLLGF 38
           K+G +F SRLPV   C H L+VL + GF
Sbjct: 476 KSG-FFDSRLPVSKACKHGLVVLAIPGF 502


>SB_25562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -3

Query: 477 SNQSCFDVGEFRYRSYLTVRIDKRFFVRIESREVEAVDGTMKHLPDAVTCHTQILCRFRC 298
           +NQ  FD+    Y + +   + K +  R+   E+EA    + +LP     H Q   R R 
Sbjct: 106 ANQELFDM----YMTAVDDFVAKGYARRVREEELEASGKPLWYLPHHPVAHAQKKGRVRV 161

Query: 297 VIKCIYPILSTKVHN 253
           V  C     ST +++
Sbjct: 162 VFHCAAKYNSTSLND 176


>SB_38707| Best HMM Match : p450 (HMM E-Value=9.3e-13)
          Length = 435

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +1

Query: 145 GKTVLKSVYLNLNT-KEFGE-ISGINSGIATAYDR-SKHVVYLGGQDGIYTFDYTTKSAK 315
           GK  L   Y ++ T +  GE I  INSG A       KH+    G+   +TFDY T++ +
Sbjct: 79  GKAGLVKDYGDVFTLRILGESIVFINSGAAAKEAMLGKHMDDFAGRPKKFTFDYITRNCQ 138

Query: 316 NLRVTSYS 339
           ++ +  YS
Sbjct: 139 DIILGDYS 146


>SB_19893| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.2e-14)
          Length = 443

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -3

Query: 414 DKRFFVRIESREVEAVDGTMKHLPDAVTCHTQILCRFRCVIKCIYPILSTKVHNVFASII 235
           D + F+R    EV  V  T+  L D +     ++ R R VI C+  I+  +   VFA+ I
Sbjct: 264 DLKNFLRSHRPEVTMVIMTVVMLVDVLVIVMMVVFRSRNVISCVVQIVRRRYVIVFAAQI 323


>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 244 SKHVVYLGGQDGIYTFDYTTKSAKNLRVTSYSIWQMFHCPVHGLYFT---TFNPDEKAFV 414
           S H+     ++G  + + TT    +LRV + S W      VHG  +    +F  +E + V
Sbjct: 323 SSHMSQHSFREGAPSLE-TTMQGVDLRVPTTSEWMRMPDTVHGQSYEETHSFRSEEPSIV 381

Query: 415 YSYGQ 429
           Y  GQ
Sbjct: 382 YEAGQ 386


>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
          Length = 1258

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 162  FKNRFSLGQRRVTEKQGVGLVVDYQLEWIVHIIF 61
            F+NR   G  RV    G+G V  Y   W V ++F
Sbjct: 911  FENRSETGISRVVAGLGMGGVQRYTTRWAVEMLF 944


>SB_43227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 297 HNEICKEFACDKLQHLANVSLSRPRPLLH 383
           HN++C    C K +H   V  S P+P  H
Sbjct: 38  HNKVCHN--CGKKRHFKEVCQSEPKPKQH 64


>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 283 ISHPVHQGTQRVCFYH 236
           + HPVH  T  VCF H
Sbjct: 318 VQHPVHTTTNSVCFQH 333


>SB_28895| Best HMM Match : p450 (HMM E-Value=0)
          Length = 492

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 193 FG-EISGINSG-IATAYDRSKHVVYLGGQDGIYTFDYTTKSAKNLRVTSYS 339
           FG +I  + SG +A      KH+    G+   +TF+Y +K  K++ +  YS
Sbjct: 70  FGMKIVVVTSGPLAREVLMGKHINDFAGRPKRFTFEYMSKGYKDIALNDYS 120


>SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 361 PVHGLYFTTFNPDEKAFVYSYGQVGPV 441
           PVHGL+     P    ++YS G  GP+
Sbjct: 127 PVHGLWKGAGPPQSGPYLYSSGTAGPL 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,740,666
Number of Sequences: 59808
Number of extensions: 360625
Number of successful extensions: 842
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)