Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310G02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi...    29   1.4  
At2g30300.1 68415.m03688 nodulin-related weak similarity to nodu...    28   4.4  
At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyc...    28   4.4  
At3g17740.1 68416.m02264 expressed protein                             27   5.8  
At1g57680.2 68414.m06546 expressed protein                             27   5.8  
At1g57680.1 68414.m06545 expressed protein                             27   5.8  
At2g02610.1 68415.m00200 DC1 domain-containing protein   contain...    27   7.7  

>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 415

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 7   ILITIIAFVHGNQEVEVLKDNVHNPFQLVVDYQTNTLFFSYSSLSQ 144
           +L T  +FV  N  +  L  N H P  LVV + T++L F + ++ +
Sbjct: 202 LLYTCNSFVQLNHPISFLFPNTHLPLWLVVLFMTSSLAFLHFTVEK 247


>At2g30300.1 68415.m03688 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 500

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +1

Query: 106 TNTLFFSYSSLSQGKTVLKSVYLNLNTKEF----GEISGINSGIATAYDRSKHVVYLGGQ 273
           TN  F +YSS  Q K +LK     LN   F    G++ G  SGIA  Y     V+  GG 
Sbjct: 23  TNLSFPAYSS--QLKELLKISQFKLNYLSFASDAGKVLGFISGIAAVYLPLPLVLLAGGS 80

Query: 274 DG 279
            G
Sbjct: 81  LG 82


>At1g77390.1 68414.m09012 cyclin, putative similar to mitotic cyclin
           a2-type [Glycine max] GI:857397; contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 442

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 303 EICKEFACDKLQHLANVSLSRPRPLLHDFQS*RKSVCLFLRS 428
           ++C  FACD  +HL  VS    RP L   +  + S+   +RS
Sbjct: 173 QLCASFACDIYEHL-RVSEVNKRPALDYMERTQSSINASMRS 213


>At3g17740.1 68416.m02264 expressed protein
          Length = 1149

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 331 SYSIWQMFHCPVHGLYFTTFNPDEKAFVYSY 423
           SY +W+ F C V G  F+ F   E   +YSY
Sbjct: 370 SYKLWREFLCVVQG-EFSRFKVSEVRRLYSY 399


>At1g57680.2 68414.m06546 expressed protein
          Length = 362

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 390 ESREVEAVDGTMKHLP-DAVTCHTQILCRFRCVIKCIYPILSTKVHNVFASII 235
           ESR +    G+   LP D    +++++     V  C YP+LST +  VFA+++
Sbjct: 162 ESR-LNGGSGSYVKLPHDFTRTYSRVIIDHDEVALCTYPLLSTILLGVFAAVL 213


>At1g57680.1 68414.m06545 expressed protein
          Length = 362

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 390 ESREVEAVDGTMKHLP-DAVTCHTQILCRFRCVIKCIYPILSTKVHNVFASII 235
           ESR +    G+   LP D    +++++     V  C YP+LST +  VFA+++
Sbjct: 162 ESR-LNGGSGSYVKLPHDFTRTYSRVIIDHDEVALCTYPLLSTILLGVFAAVL 213


>At2g02610.1 68415.m00200 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 315 LCRFRCVIKCIYPILSTKVHNVFASIICSS 226
           +C F C I+C YPI      +  A I+CSS
Sbjct: 595 ICYF-CNIRCPYPIFLVATVDRIAYILCSS 623


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,634,503
Number of Sequences: 28952
Number of extensions: 248136
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)