Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310G01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 135 2e-32
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 128 4e-30
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 5.4
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 5.4
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.1
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 7.1
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 7.1
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 7.1
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 27 7.1
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 7.1
SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012) 27 9.4
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) 27 9.4
SB_6963| Best HMM Match : PHD (HMM E-Value=0.054) 27 9.4
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 135 bits (326), Expect = 2e-32
Identities = 63/104 (60%), Positives = 73/104 (70%)
Frame = +2
Query: 209 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 388
+AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTE 60
Query: 389 XXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAV 520
EYNVE +D PGAFRC+LDVGLART+TGARVFGA+KGAV
Sbjct: 61 EVNGDEYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAV 104
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 128 bits (308), Expect = 4e-30
Identities = 80/183 (43%), Positives = 99/183 (54%), Gaps = 37/183 (20%)
Frame = +2
Query: 83 RRREGKTDYYARKR------------------------LVVQDKNKYNTP------KYRL 172
RR +GKTDYYARKR ++ Q++NK P KYR
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQERNKVGGPIFGSTQKYRR 76
Query: 173 IVRLS-NK------DVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXX 331
R NK ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG
Sbjct: 77 NSRGKYNKRNIFILQTYARIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLL 136
Query: 332 XXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 511
EYNVE VD PGAFRC+LDVGLART+TGARVFGA+K
Sbjct: 137 LARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALK 196
Query: 512 GAV 520
GAV
Sbjct: 197 GAV 199
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 170 LIVRLSNKDVTCQVAYSRIEGD-HIVC 247
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 218 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 316
++ GDH+ A+YSH ++ R+ V + L AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 106 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLS 5
ISFPFTT E Y +V F+ N LNL+
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLA 152
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 38 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 133
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 23 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 109
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 176 VRLSNKDVTCQVAYSRIEGDHIVCAAY 256
VRL ++D TC +YS I + +CA Y
Sbjct: 405 VRLVSRD-TCNASYSGIINERYICAGY 430
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 176 VRLSNKDVTCQVAYSRIEGDHIVCAAY 256
VRL ++D TC +YS I + +CA Y
Sbjct: 690 VRLVSRD-TCNASYSGIINERYICAGY 715
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
>SB_57657| Best HMM Match : PHD (HMM E-Value=0.0012)
Length = 363
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTNCCSISNESYNTLANSSCSW 98
>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/71 (21%), Positives = 37/71 (52%)
Frame = +2
Query: 32 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 211
K +K+ Q+ V+F+ +E + D + R + ++QD N T + ++++ N+ ++
Sbjct: 400 KTMKSMQFKNEELVRFQYNQEDQVDDFKRLKKLIQD-NGLPTIEQVIVLQRQNESYREEL 458
Query: 212 AYSRIEGDHIV 244
R E + ++
Sbjct: 459 MNERKEKERLL 469
>SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)
Length = 260
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 244 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 360
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQRDYCDAWYHTKCCSISNDSYNTLANSSCSW 142
>SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)
Length = 146
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 277 WCEGWSDKLCCSIFNWSAISTKTASKTW 360
+C+ W CCSI N S + +S +W
Sbjct: 115 YCDAWYHTKCCSISNESYNTLANSSCSW 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,250
Number of Sequences: 59808
Number of extensions: 332858
Number of successful extensions: 1069
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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