Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   0.73 
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    25   6.8  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    25   9.0  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +1

Query: 358 ILRLYINYKNLTLRTFFPS*--GTP-LHRPIRNFVPKTP 465
           IL   +NY+N +L    PS   G+P +H P+ N  P+TP
Sbjct: 260 ILLSPLNYQNSSLNPSTPSPFGGSPVMHPPVSNLSPRTP 298


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 512 VCSISVIKSFQILILCGVFGTKFLMGRCR 426
           V   S+  +F +  +CGVFG  +L    R
Sbjct: 418 VSHFSLYNAFSVFSVCGVFGLYYLQSSYR 446


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 334 YIRHCIAIILRLYINYKNLTLR 399
           Y   C  ++L+L +N KN+TLR
Sbjct: 429 YCPTCSFVLLQLGVNDKNMTLR 450


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,503
Number of Sequences: 5004
Number of extensions: 33814
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)