Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P...    29   1.4  
At1g80865.1 68414.m09488 expressed protein                             28   3.3  

>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
           (PTPA) family protein similar to Protein phosphatase 2A,
           regulatory subunit B' (PP2A, subunit B', PR53 isoform)
           (Phosphotyrosyl phosphatase activator) (PTPA)
           (Swiss-Prot:Q28717) [Oryctolagus cuniculus]
          Length = 392

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 460 FLERSSLWDDAEGYPNWEKMS 398
           F E S L DD  G PNW+K++
Sbjct: 341 FAEHSPLLDDISGVPNWKKVN 361


>At1g80865.1 68414.m09488 expressed protein
          Length = 130

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 488 SFQILILCGVFGTKFL 441
           SF+IL LC  FG+KFL
Sbjct: 38  SFRILFLCSAFGSKFL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,850,369
Number of Sequences: 28952
Number of extensions: 147665
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)