Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310F10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 1.3
SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.3
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 26 3.0
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 6.8
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 6.8
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 6.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 6.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 9.0
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 25 9.0
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 27.5 bits (58), Expect = 1.3
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = -3
Query: 264 KIRTCIFRFGDWRESFVYIKPQGSVIR-FHCSSAKKTFNSGKYCTNSFQSATGHVKKFFL 88
++ +F+ G S +I VI+ S+K+ FN GKY T + + H
Sbjct: 931 QLSDALFQLGYTTVSLGFIMQNLKVIKGLFSKSSKEHFNGGKYITWRLFAVSAH-----S 985
Query: 87 KLLARLIYVSLMQTNNLFLDFFIKSSCRI 1
+ A IY + Q +FF + +C I
Sbjct: 986 NVCAARIYEHMGQARE--AEFFYRQACSI 1012
>SPAC1565.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 65 YINRANNFRK--NFLTWPVADWKELVQYLPELKVFLAEEQ*NLMTDPCGLMYTKLSLQSP 238
++NR + NF + + KEL+ + P+++VFL P YT + + P
Sbjct: 101 FVNRHTGSKPQPNFYSSSESSEKELIWFQPKMRVFLQSLSNMSYLSPSKFRYTTVYSKQP 160
Query: 239 N 241
N
Sbjct: 161 N 161
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 258 RTCIFRFGDWRESFVYIKPQGSVIRFHCSSAKKTFNS 148
+TC+F +S + I P GSV+ + C AKK +S
Sbjct: 863 KTCLFCHKRLGKSVISIFPDGSVVHYGC--AKKYVSS 897
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 349 VSLLNQSNETQTKRLVQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKLN 507
+S N N++Q K L D +GIP E +EK A+++ E + ++KL+
Sbjct: 1 MSTKNALNDSQIKLLNSLNDN---KGIPSTEFVEKFAESL-YETQNDGSKKLS 49
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.0 bits (52), Expect = 6.8
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Frame = +1
Query: 151 VEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVVKEIRPILYKEDVLRAKFHSN 330
VE ++ GA P D LW + Y+ + V++ ++Y+ + S
Sbjct: 419 VENVIVMGAPMPTDAKLWLKMRCVVAGRFVNVYSASDYVLQ----LVYRVN----SAQST 470
Query: 331 GYGLAPVSL-LNQSNETQTKRLVQ---QYDELKAEGIPE----DEIIEKAAQAVAVERHS 486
GL PVSL N LV+ QY L A+ + E D I + Q++AV+
Sbjct: 471 AAGLGPVSLDSNTLENVDVGDLVEGHLQYRWLVAKILKERLGYDNISDAEIQSLAVQEEK 530
Query: 487 YAAQK 501
Y +++
Sbjct: 531 YESKQ 535
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 365 KVMKLKQNVLYSNTMN*KQKAFLKMKSLR 451
K++ LK + Y T+ Q+AFL ++SLR
Sbjct: 232 KILDLKADRAYLGTILHPQQAFLLLRSLR 260
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 507 IQFLCSIAVAFDGYCLCGFLNDFIF 433
IQ + +I + FD + L +NDF+F
Sbjct: 1597 IQIITNITLDFDSFVLRTTVNDFLF 1621
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 32 KKRLFVCISETYINRANNFRKNFLTWPVAD 121
KKR+FVC +E +R + F P ++
Sbjct: 452 KKRIFVCFAERKSDRIRRLQAFFANKPTSE 481
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 394 VQQYDELKAEGIPEDEIIEKAAQAVAVERHSYAAQKL 504
+ +++ + IP EIIE + V RHS KL
Sbjct: 437 IVEFNTSEPSSIPPQEIIEHINETVIYIRHSLFRSKL 473
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 172 GAMKPDDRPLWFDVYKAFPPITEPKYARPNLVVKEI 279
G M P+D + D ++EP R N++VK +
Sbjct: 206 GKMSPEDLGVTIDQRLQTVSVSEPVQKRQNIMVKSV 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,859
Number of Sequences: 5004
Number of extensions: 38581
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -