Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310F10f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42782| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31) 31 0.44
SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37) 30 1.3
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29) 30 1.3
SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15) 29 3.1
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30) 29 3.1
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30) 29 3.1
SB_51753| Best HMM Match : rve (HMM E-Value=8.7e-30) 29 3.1
SB_46176| Best HMM Match : rve (HMM E-Value=8.7e-30) 29 3.1
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022) 29 3.1
SB_40699| Best HMM Match : HSA (HMM E-Value=3.4) 28 4.1
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 4.1
SB_22797| Best HMM Match : WHEP-TRS (HMM E-Value=3.6) 28 4.1
SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051) 27 7.1
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 27 7.1
>SB_42782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 45.2 bits (102), Expect = 3e-05
Identities = 28/69 (40%), Positives = 37/69 (53%)
Frame = +1
Query: 106 MASSRLERIGTIFTRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARPNLVVKEIRP 285
M SR R GT+ +RV LL GA+ +P+W++V +AFPPI E K R +
Sbjct: 1 MTGSRHLR-GTVLSRVRNLLRSGALTR--KPVWYEVVEAFPPIVETKINR-RAESGRVAK 56
Query: 286 ILYKEDVLR 312
I Y ED R
Sbjct: 57 IEYPEDFFR 65
>SB_8339| Best HMM Match : rve (HMM E-Value=5.4e-31)
Length = 351
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L A F NG PV+ L+ S+ Q +R VQ E
Sbjct: 91 PDVVVSDNGPNLISEE-LSAFFSKNGIQHIPVAPLHPSSNGQAERTVQTVKE 141
>SB_55897| Best HMM Match : RVT_1 (HMM E-Value=5.3e-37)
Length = 732
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ L+ S+ Q +R VQ E
Sbjct: 646 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQTVKE 696
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ L+ S+ Q +R VQ E
Sbjct: 1569 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQTVKE 1619
>SB_18117| Best HMM Match : rve (HMM E-Value=1.7e-29)
Length = 1544
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ L+ S+ Q +R VQ E
Sbjct: 1037 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPLHPSSNGQAERTVQTVKE 1087
>SB_30312| Best HMM Match : rve (HMM E-Value=5.6e-15)
Length = 385
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ E
Sbjct: 131 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 181
>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 1280
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ E
Sbjct: 880 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 930
>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 682
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ E
Sbjct: 422 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 472
>SB_51753| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 378
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ E
Sbjct: 246 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 296
>SB_46176| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 378
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ E
Sbjct: 246 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 296
>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 256 PNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P++VV + P L E+ L F NG PV+ ++ S+ Q +R VQ E
Sbjct: 840 PDVVVSDNGPNLISEE-LSTFFSKNGIQHIPVAPVHPSSNGQAERTVQTVKE 890
>SB_16606| Best HMM Match : 7tm_1 (HMM E-Value=0.0022)
Length = 313
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 65 YINRANNFRKNFLTWPVADWKELVQYLP 148
YI R +FR+ F W + W+ V LP
Sbjct: 220 YIFRMKDFRQTFFRWLIKCWRRSVPVLP 247
>SB_40699| Best HMM Match : HSA (HMM E-Value=3.4)
Length = 221
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 241 PKYARPNLVVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDE 411
P+ AR L + + L ++RA + PV L+N+S + K L Q+Y E
Sbjct: 122 PRSARAKLQSRSLEGFLIDGTLVRAVM-MRIFSTVPVKLVNESTTIKGKALSQEYKE 177
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 28.3 bits (60), Expect = 4.1
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +1
Query: 265 VVKEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQSNETQTKRLVQQYDELKAEGIPEDEI 444
V +EI+P K L FH + L + ++ E + +RL +QYD+ E E
Sbjct: 1327 VAREIKPKREKVARLERNFHLSKRELEKIEKELKALEEELERLGKQYDDAMREKSSLQE- 1385
Query: 445 IEKAAQAVAVERHSYAAQKL 504
+A +ER AA KL
Sbjct: 1386 -----EAEIMERRLIAADKL 1400
>SB_22797| Best HMM Match : WHEP-TRS (HMM E-Value=3.6)
Length = 117
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 364 QSNETQTKRLVQQYD---ELKAEGIPEDEIIEKAAQAVAVERHSYAAQ 498
+ NE + +R VQ+Y +LK + E+EI+ Q + +HS A+
Sbjct: 13 KENEAKRRRAVQKYQTELKLKDQKSKEEEILAAELQQLKARKHSLEAK 60
>SB_11605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 100 LNMASSRLERIGTIF-TRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARP 258
L ++ RL GT + T ++ ++ RG + PD + YKA PP ARP
Sbjct: 738 LGYSNERLSDPGTFYPTLLKNIVIRGILPPDYPITERETYKAQPPNPPEIPARP 791
>SB_17172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 118 RLERIGTIF-TRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARP 258
RL GT + T +E ++ RG + PD + YKA PP ARP
Sbjct: 174 RLSDPGTFYPTLLENIVIRGILPPDYPITERETYKAKPPNPPKIPARP 221
>SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)
Length = 1024
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 100 LNMASSRLERIGTIF-TRVEGLLSRGAMKPDDRPLWFDVYKAFPPITEPKYARP 258
L + RL G + T +E ++ RG + PD + YKA PP ARP
Sbjct: 77 LGYDNERLSDPGPFYPTLLENIVIRGILPPDYPITERETYKAMPPNLPEIPARP 130
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +1
Query: 295 KEDVLR-AK-FHSNGYGLAPVSLLNQSNETQTKRLVQQYDEL 414
++DV+R AK NG + PV+L ++++T+ RL Q D L
Sbjct: 14 EKDVIRVAKPLEDNGIRVIPVALGREADKTELLRLTQDADNL 55
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,083
Number of Sequences: 59808
Number of extensions: 265219
Number of successful extensions: 736
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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