Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.12 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.62 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.82 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.82 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 276 FFDYKIRTCIFRFGDW 229
           FF Y ++TC+ + G W
Sbjct: 159 FFPYDVQTCVLKLGSW 174



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 271 KEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQ 366
           K +RP++   DVLR         L  V+L NQ
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 276 FFDYKIRTCIFRFGDW 229
           +F +  +TCI +FG W
Sbjct: 157 YFPFDQQTCIMKFGSW 172


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 276 FFDYKIRTCIFRFGDW 229
           +F +  +TC+ +FG W
Sbjct: 159 YFPFDEQTCVLKFGSW 174



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 271 KEIRPILYKEDVLRAKFHSNGYGLAPVSLLNQ 366
           K +RP++   DVLR         L  V+L NQ
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQ 73


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 276 FFDYKIRTCIFRFGDW 229
           +F +  +TC+ +FG W
Sbjct: 155 YFPFDEQTCVMKFGSW 170


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 276 FFDYKIRTCIFRFGDW 229
           +F +  +TC  +FG W
Sbjct: 151 YFPFDEQTCFMKFGSW 166


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 276 FFDYKIRTCIFRFGDW 229
           +F +  +TC  +FG W
Sbjct: 151 YFPFDQQTCFMKFGSW 166


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 276 FFDYKIRTCIFRFGDW 229
           +F +  ++CI +FG W
Sbjct: 164 YFPFDEQSCIMKFGSW 179


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 477 FDGYCLCGFLNDFIF 433
           F  YCL  FLN  ++
Sbjct: 145 FKAYCLFSFLNTIVY 159


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 467 TACAAFSMISSSGMPSAFNSSYCCT 393
           T C  FS  S S +PS  + + C T
Sbjct: 147 TTCLVFSSGSVSCVPSVKHVAKCAT 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,313
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)