Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    28   0.97 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   5.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   9.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.0  

>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = +1

Query: 307 CFI*WFGL*IKC-FKTISSSQ----YAYKYYKLVIFANSNVRNPVSINRYWG 447
           C + WF +     F+   + Q    Y  KYYK   F  +N+R P+ +   WG
Sbjct: 337 CLVHWFQIMRSAEFRMYDNDQLGHDYFLKYYKAAKFPTNNIRTPIYL--IWG 386


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = +3

Query: 60  ERPLIPAY-----LRLHSKSNQSNKYVPKMGDTINNKLYL 164
           ER LIP +     L L  K N   +Y P     +N+KLY+
Sbjct: 176 ERDLIPFHELYYKLALEGKCNYVIRYSPPSSSKLNSKLYV 215


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 102 FYYEASDTRV*EAVHYFSKDVSDIII 25
           F+YEAS   V E VH F K+ ++I I
Sbjct: 167 FFYEASHPDVLEWVHSFFKENTEIRI 192


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 181  ITVTNTKDAPTTGVN*CPNLTGGIVAKSEHCGLAPRP 291
            IT T T + P+TG    P+  G   A     G  P P
Sbjct: 1042 ITNTATNNPPSTGFTFTPSNAGSTAAPMFGAGNTPNP 1078


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 482 YHLNFSCFRLTIPQYLFIETGFLTFEFANITSL 384
           +HL+ S  R+++  Y+FI   F  F   N+ SL
Sbjct: 784 FHLSLSHIRISLFFYIFINVAF--FGTGNVASL 814


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,256
Number of Sequences: 5004
Number of extensions: 43085
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)