Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0515 - 19920411-19921694                                         28   4.0  
04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122     28   5.2  
05_03_0117 + 8580270-8580677,8581541-8582328,8582412-8582663,858...    27   6.9  
10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910...    27   9.1  
09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    27   9.1  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    27   9.1  
04_01_0169 + 1880490-1880623,1880985-1881236,1881315-1881425,188...    27   9.1  

>12_02_0515 - 19920411-19921694
          Length = 427

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 376 KYYKLVIFANSN--VRNPVSINRYWGIVRRKH 465
           K++   +F N N   RNP S+ R+  I+RRKH
Sbjct: 362 KHHYTTMFNNVNRYCRNPFSLGRHLVILRRKH 393


>04_04_1068 + 30552935-30553234,30553424-30553623,30553738-30554122
          Length = 294

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 309 TISILQWPRS*TTVFRFCNDTSS*IRTSVDSGC 211
           T+S LQW RS + ++ +C+D+     T++   C
Sbjct: 259 TLSDLQWVRSNSMIYNYCDDSVRFNATTLPKEC 291


>05_03_0117 +
           8580270-8580677,8581541-8582328,8582412-8582663,
           8582744-8582854,8582942-8583020,8583104-8583175,
           8583253-8583420
          Length = 625

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 364 QYAYKYYKLVIFANSNVRNPVSINRYW 444
           QYAY+YYK      +  R  + +  YW
Sbjct: 519 QYAYQYYKFKSEEQTRTREKLLLRTYW 545


>10_05_0093 -
           9108883-9109068,9109156-9109248,9109363-9109441,
           9109529-9109639,9109715-9109857,9110050-9110522,
           9110568-9111075,9111241-9111810,9111883-9112119,
           9112196-9112465
          Length = 889

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 364 QYAYKYYKLVIFANSNVRNPVSINRYW 444
           QYAY YYK      +  R  + ++ YW
Sbjct: 770 QYAYNYYKFKGGEQTKTREKLLVHTYW 796


>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 178  FITVTNTKDAPTTGVN*CPNLTGGIVAKSEH 270
            F  +TN+ D    G N C N T  +  KSEH
Sbjct: 935  FQDLTNSPDVVCLGSNTCSNKTKNMSIKSEH 965


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 69  LIPAYLRLHSKSNQSNKYVPKMGDTINNKLYLP 167
           L+ AYL++H  S    +YV   G T  +K  LP
Sbjct: 755 LLNAYLKIHPLSLPDLRYVGDHGSTSTSKFNLP 787


>04_01_0169 +
           1880490-1880623,1880985-1881236,1881315-1881425,
           1881514-1881592,1881676-1881768,1881849-1882034
          Length = 284

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 364 QYAYKYYKLVIFANSNVRNPVSINRYW 444
           QYAYKYYK         R  + ++ YW
Sbjct: 165 QYAYKYYKFKGGEQIRSREKLLVHTYW 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,577,483
Number of Sequences: 37544
Number of extensions: 234448
Number of successful extensions: 352
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)