Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11550.1 68417.m01852 DC1 domain-containing protein contains ...    27   5.8  
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    27   7.7  

>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 668

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 258 CNDTSS*IRTSVDSGCRRILC 196
           C++ SS + T ++SGCR  LC
Sbjct: 506 CDNWSSLVLTCIESGCRYFLC 526


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
           repair and meiosis protein Rad9 [Coprinus cinereus]
           GI:1353390, SP|Q09725 Sister chromatid cohesion protein
           mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 310 FI*WFGL*IKCFKTISSSQYAYKYYKLVIFANSNVRN 420
           FI WF L +  +K +  SQ  +KYY   + A S +RN
Sbjct: 709 FICWFYLCL-WYKDVPKSQNKFKYYIARLKAKSIIRN 744


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,673,731
Number of Sequences: 28952
Number of extensions: 210960
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)