Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   3.5  
Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
           protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 457 KSXKFAYNVLKTKTYKQFARLQ-LISQTLFSRVYFDNKLEAGSSIALQFDVDEVKAQSSS 281
           KS + +Y  +K +    +  +Q L  + L        +L+   S+ LQ  V+ +  + S 
Sbjct: 626 KSTQKSYQEMKAQLEMAYGEIQSLKKENLMIEERTLEELKQTESVELQRLVESINVEGSE 685

Query: 280 GDRRLGQA 257
            +RRLG+A
Sbjct: 686 MERRLGEA 693


>Z75526-1|CAA99772.1|  191|Caenorhabditis elegans Hypothetical
           protein C06H2.1 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 95  VGQTYDYNNVVRKVHEQSVEANAIPLFKRVQEVFFEFPQPE 217
           V Q  DYNN   K+HE  V A+ +   K+V+E + + P  E
Sbjct: 95  VDQWVDYNNARIKLHEVKV-ADGLQEAKKVEEKWAKAPPVE 134


>Z50795-6|CAD59152.2|  707|Caenorhabditis elegans Hypothetical
           protein R166.5b protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 LFKRVQEVFFEFPQPEQKIKGIAIKDLENGL 262
           LF R+Q+ ++EFP+ E  +     KDL + L
Sbjct: 443 LFHRIQDGYYEFPEEEWGMISEEAKDLVSNL 473


>Z50795-5|CAA90665.2|  705|Caenorhabditis elegans Hypothetical
           protein R166.5a protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 170 LFKRVQEVFFEFPQPEQKIKGIAIKDLENGL 262
           LF R+Q+ ++EFP+ E  +     KDL + L
Sbjct: 441 LFHRIQDGYYEFPEEEWGMISEEAKDLVSNL 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,711,506
Number of Sequences: 27780
Number of extensions: 208846
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)