Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.5  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   3.3  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   3.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 221 KIKGIAIKDLENGLAEPSITRGGLG 295
           +I G++ K +E GLA PSIT   LG
Sbjct: 36  QILGVS-KQIETGLAFPSITLIVLG 59


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 167 PLFKRVQEVFFEFPQPEQKIKGIAIKDLENGLAE 268
           P++K ++ V        Q +KGIA + +EN   E
Sbjct: 89  PVYKMIEVVHAGNADDIQLVKGIANECIENAKGE 122


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 167 PLFKRVQEVFFEFPQPEQKIKGIAIKDLENGLAE 268
           P++K ++ V        Q +KGIA + +EN   E
Sbjct: 89  PVYKMIEVVHAGNADDIQLVKGIANECIENAKGE 122


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 169 RNRVGLHTLLVYFPHNVIIIV 107
           R R+G H    Y P  +I+++
Sbjct: 210 RRRLGYHLFHTYIPSALIVVM 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,797
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)