Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310F01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3...    31   0.36 
At1g24120.1 68414.m03043 DNAJ heat shock protein, putative simil...    30   1.1  
At3g21130.1 68416.m02670 F-box family protein contains Pfam prof...    29   1.4  
At1g08710.1 68414.m00967 F-box family protein similar to ESTs gb...    27   5.8  
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ...    27   7.7  
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family...    27   7.7  

>At2g40890.1 68415.m05046 cytochrome P450 98A3, putative (CYP98A3)
           identical to Cytochrome P450 98A3 (SP|O22203)
           [Arabidopsis thaliana]; similar to gi:17978651 from
           Pinus taeda
          Length = 508

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 182 VQEVFFEFPQPEQKIKGIAIKDLENGLAEPSITRGGLGFNFVNIK-LKSDRGSGFKFVI 355
           V+ VF +   PE + KG+ ++     +A  +ITR   G  F+N + +  ++G  FK ++
Sbjct: 151 VESVFRDCNLPENRAKGLQLRKYLGAVAFNNITRLAFGKRFMNAEGVVDEQGLEFKAIV 209


>At1g24120.1 68414.m03043 DNAJ heat shock protein, putative similar
           to Altered Response to Gravity [Arabidopsis thaliana]
           GI:4249662; contains Pfam profile PF00226 DnaJ domain
          Length = 436

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 400 RLQLISQTLFSRVYFDNKLEAGSSIALQFDVDEVKAQSSSGDRRLG 263
           R++  S++ F  +YFD +  +G S+ALQ D       +S+G   LG
Sbjct: 177 RVESSSKSKFKLLYFDQEANSGLSLALQEDSKRTGKITSAGMYFLG 222


>At3g21130.1 68416.m02670 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 367

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 166 SFVQEGAGGILRIPSAGAEDQGHRYKGPREWLGRAVDHP 282
           S++ +G  G L IPS G   +G   KG   WL    D P
Sbjct: 189 SWLVDGVAGGLFIPSIGTRRRGLSVKGNTYWLALTEDGP 227


>At1g08710.1 68414.m00967 F-box family protein similar to ESTs
           gb|T22270 and gb|T76886 ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 274

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 VVRKVHEQSVEANAIPLFKRVQEVFFEFPQPEQKIKGI 235
           VVR   +Q VE NA+P+  R++ +  E    +Q+I G+
Sbjct: 150 VVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQIMGL 187


>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 387 FHRHYSHAYISITNLKPDPLSLFSLML 307
           FH H SH Y+   +++ DP+ +   +L
Sbjct: 648 FHPHLSHIYLWCCSMEEDPIPILERLL 674


>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
           protein Common family member: At2g32840 [Arabidopsis
           thaliana]
          Length = 332

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/58 (24%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +2

Query: 128 RKVHEQSVEANAIPLFKRVQE---VFFEFPQPEQKIKGIAIKDLENGLAEPSITRGGL 292
           +  +  ++ A++IP+ +++Q+   V + F  P    +G + + +   +A+PS+T G L
Sbjct: 66  QSAYSNNLYAHSIPVRRQIQDPSAVLYPFALPG---RGFSARPVRGFVADPSVTAGNL 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,068,593
Number of Sequences: 28952
Number of extensions: 198523
Number of successful extensions: 494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)