Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   2.2  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   6.8  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   9.0  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   9.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   9.0  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    25   9.0  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.0  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 5/154 (3%)
 Frame = +2

Query: 74  SRPHRS-PVVSCRFPLRINVLTDQRNSFTKDTTTSTAVTFPS*P-TGK*TGWTDATFAVN 247
           S P+ S PV S  + +  +         T + TTST+V + S P T      T+ T + +
Sbjct: 501 SVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTS 560

Query: 248 TAWTSSLWRPRKKTIXXXXXXXRTMFPTFGHRDVYATSRDVKREKISNPRTFSAGSGPLT 427
             +TS+       TI        T  P        +TS       I++P + S+ S  ++
Sbjct: 561 VPYTSTPVTSSNYTISSSTPVTST--PVTTTNCTTSTSVLYTSTPITSPNSTSSSSTQVS 618

Query: 428 EKRSRPLIRYRT---VGATTLGLRPGTRSSAXLT 520
              + P+    T     +T++ L    R+S   T
Sbjct: 619 WNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFT 652


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 241 REYCMDLVSMETQEENNLIFKLIQQNDV 324
           +E  +DL+ M+ QEEN+ I  +  +ND+
Sbjct: 321 KEKILDLLEMKQQEENDRISHIEYENDL 348


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 268 METQEENNLIFKLIQQNDVPYIWTSGRLCDFKGCETRKDLE 390
           M T+E+ N       +N++P+++ S R+   +  E  +DLE
Sbjct: 213 MLTEEQRNYWSSYFNENNIPFLFFSARMA-AEANERGEDLE 252


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = -2

Query: 349 DVPMSKCREHRS--AG*A*RSDCFLPGSP*RRGPCSIHGKCCVRPTSLLSGWLARERDRC 176
           D   S  + HRS  A     S C   GSP  R   S+ G  C   T L  G L  E    
Sbjct: 158 DPSPSTAQNHRSPPASCKRLSSCESSGSPSSRVVGSLQGSYCPSGTHLHEGSLLLEDSSA 217

Query: 175 RSS 167
           R S
Sbjct: 218 RHS 220


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 163 HNYFYSGHVPELANRKVDWLD 225
           H   +S ++P L ++K +WLD
Sbjct: 331 HGQIWSDNIPTLLDQKHNWLD 351


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 451 QIPNRWGYNPWSQTGHKKQRXPD 519
           QIP  W Y  W+QT  K+   P+
Sbjct: 474 QIPCDWVYIQWAQTYIKQSSEPE 496


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 322 VPYIWTSGRLCDFKGCETRKDLEPKNILGWFWSANREKISPTNQIP 459
           V Y +  G+  D +G     ++E   +L W    N + ++P N  P
Sbjct: 70  VKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRP 115


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 456 YLISGRDLFSVSGPEPAENVLGFEIFSRFTSLEVA 352
           +  SGR+ FSVS P  + + L +   S  +++ VA
Sbjct: 510 FSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVA 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,555
Number of Sequences: 5004
Number of extensions: 46759
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)