Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310E09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0231 + 1744323-1745276,1745516-1746193 31 0.56
11_01_0234 + 1804581-1805357,1805941-1806447 31 0.56
06_03_0389 - 20273637-20274383,20274488-20274979 30 1.3
06_03_0387 - 20244279-20245025,20245130-20245621 30 1.3
07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938... 28 4.0
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101... 27 6.9
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 27 6.9
06_01_0441 + 3130906-3131424,3131847-3132269 25 8.2
11_06_0757 + 26964983-26965048,26965470-26965874,26966921-269678... 27 9.1
11_01_0605 + 4821363-4823246 27 9.1
11_01_0091 - 681452-681739,682532-682630,682697-682838,682875-68... 27 9.1
03_03_0185 + 15233133-15233469,15233950-15234057,15234146-152344... 27 9.1
>12_01_0231 + 1744323-1745276,1745516-1746193
Length = 543
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -2
Query: 202 WLARERDRCRSSCVLGKRIPLVC*HIYAQR----EATGNDRASVRSREPTTQLRKPP 44
WL E CR V G P++C + R A + A+ ++P Q+ +PP
Sbjct: 470 WLMEEHHCCRQQAVAGDEEPVICRMYVSPRAPPDSAARQESAAFVQQQPAPQVSEPP 526
>11_01_0234 + 1804581-1805357,1805941-1806447
Length = 427
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -2
Query: 202 WLARERDRCRSSCVLGKRIPLVC*HIYAQR----EATGNDRASVRSREPTTQLRKPP 44
WL E CR V G P++C + R A + A+ ++P Q+ +PP
Sbjct: 354 WLMEEHHCCRQQAVAGDEEPVICRMYVSPRAPPDSAARQESAAFVQQQPAPQVSEPP 410
>06_03_0389 - 20273637-20274383,20274488-20274979
Length = 412
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 206 GK*TGWTDATFAVNTAWTSSLWRPRKKTI 292
GK G TD+T AVN AWT++ K+TI
Sbjct: 52 GKGDGKTDSTKAVNEAWTAACAGTGKQTI 80
>06_03_0387 - 20244279-20245025,20245130-20245621
Length = 412
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 206 GK*TGWTDATFAVNTAWTSSLWRPRKKTI 292
GK G TD+T AVN AWT++ K+TI
Sbjct: 52 GKGDGKTDSTKAVNEAWTAACAGTGKQTI 80
>07_03_0829 -
21792924-21793247,21793332-21793482,21793577-21793811,
21793900-21794110,21794218-21794435,21794536-21794671,
21796732-21797517
Length = 686
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 143 FGLLAHLCATGSDRKRPGFCAVARTDNAATKATTNHACILNDV 15
F +L +L A + PGFC+ +T + C +NDV
Sbjct: 636 FMMLGNLSAVVPQPRHPGFCSDRGGGGGSTDGEWSSTCTVNDV 678
>12_02_0025 +
12408933-12409464,12409590-12409686,12410121-12410127,
12412339-12412465,12412907-12413136
Length = 330
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 265 SMETQEENNLIFKLIQQNDVPYIWTSGRLCDFKGCETRKDLEP 393
+++ +EEN++ K ++++ P I+ G E +DLEP
Sbjct: 216 NIQQKEENDVTEKKEEKHEAPAIYEDSFQGKLNGAEINEDLEP 258
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -2
Query: 199 LARERDRCRSSCVLGKRIPLVC*HIYAQREATGNDRASVRSREPTTQLRK 50
LARER+ SS V GK + H Q EA+ S R+ T RK
Sbjct: 935 LAREREEQNSSVVYGKAMFTTISHGKVQDEASTRCNTSNRTPSRRTSRRK 984
>06_01_0441 + 3130906-3131424,3131847-3132269
Length = 313
Score = 25.0 bits (52), Expect(2) = 8.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = +1
Query: 409 WFWSANREKISPTNQIPNRWGYNP 480
W W R + NQ+ R G+ P
Sbjct: 197 WIWFTGRSALHLWNQLSRRMGFEP 220
Score = 20.6 bits (41), Expect(2) = 8.2
Identities = 5/15 (33%), Positives = 11/15 (73%)
Frame = +1
Query: 292 LIFKLIQQNDVPYIW 336
+IF+ + ND+ ++W
Sbjct: 183 IIFRRLTHNDLQWVW 197
>11_06_0757 +
26964983-26965048,26965470-26965874,26966921-26967814,
26972063-26972512,26973013-26973637,26994014-26994651,
26994967-26995032
Length = 1047
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 178 SGHVPELANRKVDWLDGR 231
SG+ +A +KVDWL+GR
Sbjct: 574 SGNGRRIAEKKVDWLEGR 591
>11_01_0605 + 4821363-4823246
Length = 627
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/80 (21%), Positives = 41/80 (51%)
Frame = -3
Query: 381 FSRFTSLEVA*TSRCPNVGNIVLLDELEDQIVFFLGLHRDEVHAVFTANVASVQPVYFPV 202
FS ++LE+ S G + + + + +LGLH ++++ V ++++ +Q + +
Sbjct: 434 FSDMSALEILNLSHNSFTGELPFTNSTQSLKLCYLGLHGNKLNGVIPSSISLLQSL-ITI 492
Query: 201 G*LGNVTAVEVVVSLVKEFL 142
LGN + ++ + + FL
Sbjct: 493 D-LGNNELIGIIPTNIGTFL 511
>11_01_0091 -
681452-681739,682532-682630,682697-682838,682875-682991,
683133-683176
Length = 229
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 386 SNPRTFSAGSGPLTEKRSRPLIRYRTVGATTLGLRPGTRSSAXL 517
S R + G GP+ +K +R LIR LG+ P ++ + +
Sbjct: 85 STHRGSTVGMGPVRDKVTRELIRTVNDAGVALGMPPSSQQESSI 128
>03_03_0185 +
15233133-15233469,15233950-15234057,15234146-15234420,
15234504-15234758,15234853-15234971,15235525-15235620,
15235705-15235810,15236039-15236179
Length = 478
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 6/23 (26%)
Frame = +1
Query: 154 YQGHNYF-----YSGH-VPELAN 204
YQGH++F Y+GH +PELAN
Sbjct: 198 YQGHDFFITGESYAGHYIPELAN 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,782
Number of Sequences: 37544
Number of extensions: 331643
Number of successful extensions: 960
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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