Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   2.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   4.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.7  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 86  RSPVVSCRFPLRINVLTDQRNSFTKDTTTSTAVT 187
           +SP++SC  P  + +L+D      K +TT    T
Sbjct: 56  KSPLLSCACPDGLKLLSDGLMCVEKVSTTIVPTT 89


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 86  RSPVVSCRFPLRINVLTDQRNSFTKDTTTS 175
           +SP++SC  P  + +L+D      KD+  S
Sbjct: 56  KSPLLSCACPDGLKLLSDGLMCVEKDSIHS 85


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 238 CREYCMDLVSMETQEENNLIFKLIQQND 321
           C+ YCMDL+  E  +  N  + L    D
Sbjct: 459 CKGYCMDLLK-ELSKTINFTYSLALSPD 485


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 84  CGRENRQRSYESHHQPR 34
           C RE  Q+SY++ +  R
Sbjct: 274 CSREREQKSYKNENSYR 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,482
Number of Sequences: 438
Number of extensions: 3744
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)