Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23490.1 68417.m03384 fringe-related protein  + weak similari...    29   1.4  
At1g71710.1 68414.m08289 inositol polyphosphate 5-phosphatase, p...    28   3.3  
At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    27   7.7  

>At4g23490.1 68417.m03384 fringe-related protein  + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 526

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = +2

Query: 224 TDATFAV-NTAWTSSLWRPRKKTIXXXXXXXRTMFPTFGHRDVYATSRDVKREKISNPRT 400
           TD    V   A +S LW+ RK+ I       R     +  ++V  +  D   EK+  P  
Sbjct: 109 TDLNHVVFGIAASSKLWKQRKEYIKIWYKPKRMRGYVWLDKEVKKSLSDDDDEKLLPPVK 168

Query: 401 FSAG--SGPLTEKR-SRPLIRYRTVGATTLGLRP 493
            S G  S P T K+  R  +R   + + TL L P
Sbjct: 169 ISGGTASFPYTNKQGQRSALRISRIVSETLRLGP 202


>At1g71710.1 68414.m08289 inositol polyphosphate 5-phosphatase,
           putative similar to inositol polyphosphate 5-phosphatase
           I [Arabidopsis thaliana] GI:10444261
          Length = 664

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 465 TVRYLISGRDLFSVSGPEPAENVLGFEIFSRFTSLE 358
           T+  ++SG++   +S PEP  N+LG  +  R  S++
Sbjct: 322 TINRMLSGKERIGLSWPEPPLNMLGPCVLDRQPSIK 357


>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
            subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
            eukaryotic translation initiation factor 3 subunit 10
            (eIF-3 theta) (Eukaryotic translation initiation factor 3
            large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
            SWISS-PROT:Q9LD55
          Length = 987

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 415  WSANREKISPTNQIPNRWGYNP 480
            W++NRE+  P  +  +RWG  P
Sbjct: 946  WTSNRERSGPPAEGGDRWGSGP 967


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,407
Number of Sequences: 28952
Number of extensions: 261157
Number of successful extensions: 766
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)