Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    29   0.56 
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    26   3.9  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    26   3.9  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   5.2  
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    25   5.2  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   5.2  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    25   6.8  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    25   6.8  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   9.0  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.0  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   9.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.0  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   9.0  

>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 361 LHPDQDQTLVHYSVWPYSASQKKDSLVAISQDPATKIVERRSKVFS-VDSK 510
           LHPD   T +H  +    +S   D+ + ISQ   +  +++ S + S +D+K
Sbjct: 69  LHPDLYSTFIHTGIATIVSSSDNDNKICISQGILSVTLDKDSYLVSGIDAK 119


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = -1

Query: 374 WSGCRGSTLNFISPDLIS-------IPNLNGMLNWSLFTTPTLEYWLLRVSIKPTFPS 222
           W G RG++ N I     +       IP LNG L    F  PT +  ++ +++K   P+
Sbjct: 196 WRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPT 253


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
 Frame = -1

Query: 374 WSGCRGSTLNFISPDLIS-------IPNLNGMLNWSLFTTPTLEYWLLRVSIKPTFPS 222
           W G RG++ N I     +       IP LNG L    F  PT +  ++ +++K   P+
Sbjct: 196 WRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPT 253


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 286 YSQHLHWNIGC*GYP*SQRFRQYSW 212
           Y + L WN+     P SQR + ++W
Sbjct: 12  YHELLDWNVKAPHVPLSQRLKHFTW 36


>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 489 LASTFDNFSSWVLRDCNKGILLLAGTVRPNTIV 391
           L S  D  +  + +   K + +L GTVRP  IV
Sbjct: 33  LGSLIDYMAQIIEKPSQKDLFILNGTVRPGIIV 65


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 200 NSHTPGILTETLALWIPL 253
           N+HT   L+ TLA+W+P+
Sbjct: 259 NNHTAVPLSPTLAVWLPM 276


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +1

Query: 301 IPFKFGIEIKSGLIKFRVEPLHPDQDQTLVHYSVWPYSASQKKDSLVA--ISQDPATKIV 474
           +P  F  E     + FR + ++  +D+TLVH S      S  +D+ +        A  I 
Sbjct: 263 VPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPPERELSVHEDAFIGSFFDNQLAIDIA 322

Query: 475 ERRS 486
           E RS
Sbjct: 323 EGRS 326


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 160 DNKYYEANMIKDVQFTYARNIDGNVGFMDTL 252
           D  + E+N + D  FT AR ++  + F+D +
Sbjct: 163 DKWFGESNKLVDALFTLARKLEPTIIFIDEI 193


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/74 (24%), Positives = 31/74 (41%)
 Frame = +1

Query: 91  KYKEPAVIHFQSKLKGKFSFPSKDNKYYEANMIKDVQFTYARNIDGNVGFMDTLSNQYSS 270
           ++  P+    +S  + K S P   + Y EAN  K + +TYA  +  +  F+  L      
Sbjct: 52  QHAAPSSDRIKSLPEFKGSLPELYSGYLEANSDKSLFYTYAPAVVDSETFIVWLQGGPGC 111

Query: 271 VGVVNKLQFNIPFK 312
            G +     N P +
Sbjct: 112 AGTLGFFSENGPIE 125


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 381 LILVWMQRFDSELY*SRFNFDSEFERYVKLEFIHNTYTG 265
           L+L    RF  EL     NF S  E  + L FIH  Y+G
Sbjct: 360 LLLTNQPRFTDELV----NFKSSNEMMMNLLFIHVKYSG 394


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 257 LLRVSIKPTFPSIFLAYVNCTSLIMFAS 174
           L+++ ++  FP +  +Y+N  S ++F S
Sbjct: 651 LVKIELENAFPLVKESYINTLSRVLFVS 678


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 371 SGCRGSTLNFISPDLISIPNLNGMLNWSLFTTPTLEY 261
           SGC+    NF   D+ SIP     +N S F   +  Y
Sbjct: 128 SGCQPFVTNFDVQDVDSIPETLSQVNRSSFQKSSCAY 164


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 195 RAIHIRQEY*RKRWLYGYP*QPIFQ 269
           +A H+R +   ++W+YGY   PIF+
Sbjct: 524 KASHMRLDVFAQQWIYGYG-YPIFR 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,563
Number of Sequences: 5004
Number of extensions: 46912
Number of successful extensions: 105
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)