Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0085 + 28264399-28266186                                         31   0.74 
12_02_1075 - 25854662-25855015,25855895-25856045,25856141-258563...    28   5.2  
03_05_0181 - 21621561-21621932,21622024-21622329                       28   5.2  
03_05_0180 + 21593763-21594605                                         28   5.2  
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    27   9.1  

>11_08_0085 + 28264399-28266186
          Length = 595

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 292 QFNIPFKFGIEIKSGLIKFRVEPLHPDQDQTLVHYSVWPYSA 417
           +F +PF+F   + +       E LH + D+ LV   +W +SA
Sbjct: 382 EFRVPFRFQAVVAAKWETVGAEDLHIEPDEVLVVNDLWSFSA 423


>12_02_1075 -
           25854662-25855015,25855895-25856045,25856141-25856378,
           25856494-25856704,25856973-25857088,25857844-25857877,
           25857996-25858253
          Length = 453

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 3/136 (2%)
 Frame = +1

Query: 43  QVSIMFPVASGMPFIFKYKEPAVIHFQSKLKGKFSFPSKDNKYYEANMIKDVQFTYARNI 222
           +V I   VASG+ ++ +   P ++H   K            K  +  + K          
Sbjct: 220 RVKICIGVASGLKYLHEEVRPVIVHRDIKASNILLDKDLSPKISDFGLAKLFPGNMTHIS 279

Query: 223 DGNVGFMDTLSNQYSSVGVVNKLQFNIPFKFGI---EIKSGLIKFRVEPLHPDQDQTLVH 393
               G +  L+ +Y+  G + K + ++ + FG+   EI SG  +   +P  P QDQ L+ 
Sbjct: 280 TRVAGTLGYLAPEYAIRGQLTK-KADV-YSFGVLLLEIVSG--RCHTDPRLPLQDQFLLE 335

Query: 394 YSVWPYSASQKKDSLV 441
              W    S    SLV
Sbjct: 336 -RAWALYESGDLKSLV 350


>03_05_0181 - 21621561-21621932,21622024-21622329
          Length = 225

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 483 STFDNFSSWVLRDCNKGILLLAGTVRPNTIV 391
           S  DN +S+VL D  +G+ + AGT RP   V
Sbjct: 52  SAADNMASYVL-DLRRGLAVFAGTGRPEEAV 81


>03_05_0180 + 21593763-21594605
          Length = 280

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 483 STFDNFSSWVLRDCNKGILLLAGTVRPNTIV 391
           S  DN +S+VL D  +G+ + AGT RP   V
Sbjct: 72  SAADNMASYVL-DLRRGLAVFAGTGRPEEAV 101


>10_08_0043 -
           14390398-14391531,14391850-14393691,14393800-14396825,
           14397510-14397609
          Length = 2033

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 322 EIKSGLIKFRVEPLHPDQDQTLVHYSVWPYSASQKKDSLVAISQDPATKIVERRSKVFSV 501
           E++  L K ++E  + +Q   L+   +   S S   DSL    +D   K V+  + + S+
Sbjct: 587 ELELQLSKTQLELKNSEQKMQLLELEITQKSESM--DSLTLSLKDETEKRVQAETSLMSM 644

Query: 502 DSKYGQ 519
           +S Y Q
Sbjct: 645 ESMYSQ 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,396,454
Number of Sequences: 37544
Number of extensions: 266525
Number of successful extensions: 632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)