Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09010.1 68416.m01055 protein kinase family protein contains ...    30   1.1  
At1g09440.1 68414.m01056 protein kinase family protein contains ...    29   1.4  
At1g67040.1 68414.m07624 expressed protein ; expression supporte...    28   4.4  
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di...    27   5.8  
At5g17410.2 68418.m02043 tubulin family protein similar to spind...    27   7.7  
At5g17410.1 68418.m02042 tubulin family protein similar to spind...    27   7.7  

>At3g09010.1 68416.m01055 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 393

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = +1

Query: 4   GAEKHYTKVYNQDQVSIMFPVASGMPFIFKYKEPAVIHFQSKLKG---KFSFPSKDNKYY 174
           G+   Y  +    + +I    ASG+ F+ +  EP V+H   K        +F  K   + 
Sbjct: 133 GSRSRYVPLDWSKRAAICVGTASGLAFLHEEVEPHVVHRDIKASNILLDSNFSPKIGDFG 192

Query: 175 EANMIKDVQFTYARNIDGNVGFMDTLSNQYSSVGVVNK 288
            A +  D     +  + G VG+   L+ +Y+ +G + K
Sbjct: 193 LAKLFPDNVTHVSTRVAGTVGY---LAPEYALLGQLTK 227


>At1g09440.1 68414.m01056 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 466

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 29/164 (17%), Positives = 76/164 (46%), Gaps = 5/164 (3%)
 Frame = +1

Query: 4   GAEKHYTKVYNQDQVSIMFPVASGMPFIFKYKEPAVIHFQSKLKGKF---SFPSKDNKYY 174
           GA KH+  +  + ++ ++   +  + ++ +  EP V+H   K         F +K + + 
Sbjct: 244 GAMKHHGYLTWEARMKVLTGTSKALAYLHEAIEPKVVHRDIKSSNILIDDRFNAKISDFG 303

Query: 175 EANMIKDVQFTYARNIDGNVGFMDTLSNQYSSVGVVNKLQFNIPFKFGIEIKSGLI-KFR 351
            A ++ D +      + G  G+   ++ +Y++ G++N  + +  + FG+ +   +  +  
Sbjct: 304 LAKLLGDGKSHVTTRVMGTFGY---VAPEYANTGLLN--EKSDVYSFGVLVLEAITGRDP 358

Query: 352 VEPLHPDQDQTLVHYSVWPYSASQKKDSL-VAISQDPATKIVER 480
           V+   P  +  LV +      + + ++ +   I+  PAT+ ++R
Sbjct: 359 VDYARPANEVNLVEWLKMMVGSKRLEEVIDPNIAVRPATRALKR 402


>At1g67040.1 68414.m07624 expressed protein ; expression supported
           by MPSS
          Length = 826

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +1

Query: 187 IKDVQFTYARNIDGNVGFMDTLSN---QYSSVGVVNKLQFNIP--FKFGIEIKSGLIKFR 351
           ++D+   Y R   G   F  ++ N   +Y+S G V    F+    F    +  SG ++  
Sbjct: 576 VRDIDMPYRRK--GKTEFWSSIGNANSEYTSPGSVLDASFSNESCFSNSFDNISGQMRLP 633

Query: 352 VEPLHPDQD 378
           +EP+ PD D
Sbjct: 634 LEPIEPDWD 642


>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
           Dictyostelium discoideum, DDU66526
          Length = 983

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 341 ISPDLISIPNLNGMLNWSLFTTPTLEYWLLRVSIKPTF 228
           I+  LI  PN N ++ +  F  PT+E  +   +I PTF
Sbjct: 194 IARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPTF 231


>At5g17410.2 68418.m02043 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 679

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 290 SLFTTPTLEYWLLRVSIKPTFPSIFLAYVNCTSL 189
           SL    T +YW  R S+K T P  FLA +  T L
Sbjct: 271 SLSQDSTAKYWSQRYSLKDTIPG-FLANIAATIL 303


>At5g17410.1 68418.m02042 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 678

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 290 SLFTTPTLEYWLLRVSIKPTFPSIFLAYVNCTSL 189
           SL    T +YW  R S+K T P  FLA +  T L
Sbjct: 270 SLSQDSTAKYWSQRYSLKDTIPG-FLANIAATIL 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,274,309
Number of Sequences: 28952
Number of extensions: 234033
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)