Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    53   3e-08
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   0.97 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   0.97 
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   1.3  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   1.3  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   1.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.2  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   5.2  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    25   9.0  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
 Frame = +3

Query: 174 PVSASNPQQQEQVRLVRLCLY--REGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSG 347
           P   + P + +  + +R  LY  R GF+VD GP+  Y DP N E L  I  G  P  L G
Sbjct: 197 PPRENPPTESQPEKPLRRTLYFWRNGFSVDDGPIYTYDDPANQEMLRYINSGRAPLHLLG 256

Query: 348 QGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGS 455
             ++  + +   +H     +V   + F+GKG  LGS
Sbjct: 257 VSMNQPIDVV-VQHRMDEDYVAPFKPFSGKGQRLGS 291


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 231  DTVSPVSLALVVVDSMQTLARDHLQFVLIYSQL 133
            DTV  V + +++   +QTL R+H+  VLI  Q+
Sbjct: 2299 DTVQTVGIGIIL---LQTLTREHITVVLITGQI 2328


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 28  ISSLKCSRASESEEQSSLKTNQHPVEAVVEGASSPELA 141
           ISS + S  S + EQS    +  P E V +G+ SPE A
Sbjct: 445 ISSTQLSNESLTHEQSINGNSPSPNEGVFQGSFSPESA 482


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 279 SDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHM 446
           S PENA +L  +   EI S +     S++ S  D R  + P H +   A  G G M
Sbjct: 138 SCPENAIYLVVLPSYEIESSIDYYLSSLQESFSDFRVPKDPLHGLSGYAVFGLGDM 193


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = +3

Query: 159 ADDHEPVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSE 338
           A+D   + +S P+ + +  +       EG   +A  L+  S PEN    S + +  +P +
Sbjct: 469 AEDSVVLKSSVPEDKSENSIASKPSATEGIPENAIALQS-SVPENKAEDSVVLKSSVPED 527

Query: 339 LSGQGVSVRVSLEDSRHE 392
            S   V  + S+ + +HE
Sbjct: 528 KSEDSVPSKSSVLEDKHE 545


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 43  CSRASESEEQSSLKTNQHPVEAVVEGASSP 132
           CSR  ESEE  +   N+  V+ + E  S P
Sbjct: 34  CSRCKESEESCTYGVNEQAVQLLEEPLSRP 63


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 186  MQTLARDHLQFVLIYSQL 133
            +QTLARDH+ F L+ +Q+
Sbjct: 2270 LQTLARDHVAFTLMLAQV 2287


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 267 LRHYSDPENAEF 302
           LRHYS+PE AEF
Sbjct: 638 LRHYSNPEIAEF 649


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 321 RDVCSSGTPRSPGRCSGAAD 262
           R +C+  TP SPG   G  D
Sbjct: 9   RGLCTPSTPESPGSFKGVID 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,132
Number of Sequences: 5004
Number of extensions: 26090
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)