Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310E07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 64 9e-11
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 57 1e-08
06_03_0941 + 26179682-26182327 32 0.24
05_03_0150 - 8953545-8954024 31 0.56
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636 30 1.3
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 29 2.3
06_03_0339 - 19687749-19690805 28 4.0
05_05_0175 + 22966151-22967614 28 5.2
03_06_0515 + 34457933-34458343,34458822-34459000,34459491-344598... 28 5.2
02_04_0044 - 19198001-19199236 28 5.2
11_06_0377 - 22900042-22900452,22900527-22902236 27 6.9
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523... 27 9.1
05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869 27 9.1
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 63.7 bits (148), Expect = 9e-11
Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +3
Query: 156 TADDHEPVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPS 335
T + EPV+ PQ E + + + + GFTV+ GPLR + DP NA FL I+ E PS
Sbjct: 244 TGESAEPVA---PQSPESI-VHNIYFWTNGFTVNDGPLRSFDDPANASFLKSIKNSECPS 299
Query: 336 ELSGQGVSVRVSLEDSRHEE-CPRHVVKPQAFAGKGHMLGS 455
EL +V++ R EE CP V + F G LG+
Sbjct: 300 ELEPADKKSQVNVNLVRKEEKCPEPVKRAAPFHGAAKTLGT 340
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 56.8 bits (131), Expect = 1e-08
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 2/146 (1%)
Frame = +3
Query: 21 RKDIVSEMFKSVRERGAVVFEDEPTSSXXXXXXXXXXXXXXXLGQTADDHEPVSASNPQQ 200
R++ V +F+ R+ GA+ + P G+TA P + P
Sbjct: 100 RRNTVDSIFEQARQMGALQDQPPPFEDQSSSSRSFTGTGRLLSGETA----PAAPPPPGN 155
Query: 201 QEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSEL--SGQGVSVRVSL 374
L + + GFTVD GPLR Y DP NA+F+ I++ + P EL + + V V++
Sbjct: 156 V----LHNIQFWNNGFTVDDGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNV 211
Query: 375 EDSRHEECPRHVVKPQAFAGKGHMLG 452
R E+ + P F G G LG
Sbjct: 212 -IKRLEDYQAPLRPPSPFQGVGRTLG 236
>06_03_0941 + 26179682-26182327
Length = 881
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 174 PVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQG 353
P+ A + + Q+++ R V AGP HY +P N + + I + E P +G
Sbjct: 347 PLDAEDKEDQDRITAER----NTPLVVTAGPSLHYPNPPNPDKVLYINKKEAPLLKVERG 402
Query: 354 VSVRVSLE 377
V V S+E
Sbjct: 403 VPVTFSVE 410
>05_03_0150 - 8953545-8954024
Length = 159
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 191 STTTRASETGETVSVPRRLHG-GRGSAAPLQRPGERGVP 304
ST T +E G+ ++V R + G G G A + PGE G P
Sbjct: 43 STVTVLAEHGDDIAVRRPVAGIGAGEEASVAAPGEHGAP 81
>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
Length = 950
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 22 GKISSLKCSRASESEEQSSLKTNQHP---VEAVVEGASSPELA 141
G SSLK R +E S L+ HP V A E AS P +A
Sbjct: 906 GSDSSLKRMRLAEPSSSSQLQVTGHPHPVVVAATEAASQPSMA 948
>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +3
Query: 147 LGQTA-DDHEPVSASNPQ---QQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCI 314
LG T D + V A+N + L+ LCL E F D L +P+ ++C+
Sbjct: 896 LGYTILSDEQLVLANNSNLSNNSTDIALLMLCLLTEAFYADGTSLGDVCEPKLGAEITCL 955
Query: 315 RR 320
RR
Sbjct: 956 RR 957
>06_03_0339 - 19687749-19690805
Length = 1018
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +1
Query: 1 HEGQVKAGKISSLKCSRASESEEQSSLKTNQHPVEAVVEGASSPE 135
H+G V G+ C+ + + + N+H + VEG E
Sbjct: 737 HKGSVDVGESQHATCANTGFATRTTKAEINEHNARSAVEGTDDDE 781
>05_05_0175 + 22966151-22967614
Length = 487
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 309 SSGTPRSPGRCSGAADPRPP 250
++GTPRS RC G P P
Sbjct: 85 AAGTPRSAARCGGGGSPGAP 104
>03_06_0515 +
34457933-34458343,34458822-34459000,34459491-34459812,
34459945-34460025
Length = 330
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 146 IRTNCR*SRASVCIESTTTRASETGETVSVPRRLHGGRGSAAPLQRPGERG 298
+R CR S A+ + + RAS G T+SV + GG G +R +RG
Sbjct: 8 LRLPCRCSLAAAAVPAPP-RASP-GPTISVSMSVDGGEGELTGRERRKQRG 56
>02_04_0044 - 19198001-19199236
Length = 411
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/71 (28%), Positives = 31/71 (43%)
Frame = -3
Query: 309 SSGTPRSPGRCSGAADPRPP*SLRGTDTVSPVSLALVVVDSMQTLARDHLQFVLIYSQLR 130
S G+ S G GAA P P L G + P +A +++DS + + D L +L
Sbjct: 255 SGGSSNSAGADGGAASPTPLVRL-GWNKQDPRYMATIIMDSPKVVVLDIRYPTLPVVELH 313
Query: 129 RRGPLDHGLYW 97
R + + W
Sbjct: 314 RHHSPVNAIAW 324
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 6.9
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Frame = +2
Query: 170 RASVCIESTTTRASETG-ETVSVPRRLHGGRGSAAPLQRPGERGVPELHTSR*DSXXXXX 346
RA +E+ RA + G E G A R GE P+ D+
Sbjct: 93 RARYGVETRGFRAEDVGDEGCRGQGHEVDAAGDADDEARRGEVRAPQGRAYDDDAAEDEE 152
Query: 347 XXXXXXXEPRGQQTRGVSPARGQAAGLRRER 439
G++ RGV P R +A LRR+R
Sbjct: 153 GLRFLPGRALGEEVRGVLPLRDRALRLRRDR 183
>10_02_0094 -
5228472-5228703,5229040-5229133,5230627-5230675,
5231229-5231321,5231404-5231635,5232416-5232506,
5232693-5232784,5232862-5232970,5233331-5233430,
5233614-5233754,5233846-5234010,5234088-5234279,
5234409-5234537,5234619-5234734,5234821-5234965,
5235039-5235102,5235241-5235463,5235584-5236244,
5236909-5237250
Length = 1089
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 88 SSSKTTAPRSLTLLNISETISFLPLLGP 5
SSS ++ P +LTLL S LPL P
Sbjct: 4 SSSSSSTPHALTLLTSSPRFLHLPLCSP 31
>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
Length = 664
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 228 CLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSR 386
C +E + A RH E EFLS R P L G ++S ED R
Sbjct: 368 CTIQESYAAAAAAARHPKPDEQVEFLSSSRAMTTPLLLQNGG---QLSSEDVR 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,588,541
Number of Sequences: 37544
Number of extensions: 214631
Number of successful extensions: 762
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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