Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33080| Best HMM Match : SEP (HMM E-Value=4.48416e-44)               79   2e-15
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.047
SB_1747| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.047
SB_41231| Best HMM Match : ARID (HMM E-Value=0)                        29   1.8  
SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)         27   7.1  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4)           27   9.4  
SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)                   27   9.4  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   27   9.4  
SB_1527| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_33080| Best HMM Match : SEP (HMM E-Value=4.48416e-44)
          Length = 268

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
 Frame = +3

Query: 174 PVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSEL--SG 347
           P++   P Q  +V L     +  GF+VD G LR + DPEN +FL+ +++GEIP EL    
Sbjct: 123 PMTQDQPSQDTEVALR---FWSNGFSVDDGELRSFDDPENEDFLASVKKGEIPRELLRLS 179

Query: 348 QGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGS 455
           +G  V V+LED RHEE      K  AFAG+G  LGS
Sbjct: 180 RGGEVHVNLEDHRHEEYVPQKKKMTAFAGEGRKLGS 215


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 219  VRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQ---GVSVRVS 371
            + L LY  G  +  GP R ++DP   + +  I  G  PSEL  +   GV + V+
Sbjct: 1538 IPLALYYNGIVMFEGPFRPFTDPTTQQCMRDIMEGYFPSELQSRYPDGVPINVT 1591


>SB_1747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 34.7 bits (76), Expect = 0.047
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 219 VRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQ---GVSVRVS 371
           + L LY  G  +  GP R ++DP   + +  I  G  PSEL  +   GV + V+
Sbjct: 5   IPLALYYNGIVMFEGPFRPFTDPTTQQCMRDIMEGYFPSELQSRYPDGVPINVT 58


>SB_41231| Best HMM Match : ARID (HMM E-Value=0)
          Length = 358

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 209 SETGETVSVPRRLHGGRGSAAPLQRPG--ERGVPEL 310
           S TGE V VP  +HG  G  A L  PG   R  PEL
Sbjct: 160 SPTGEEVHVPPTVHGNNG-VAVLHSPGLSHRTTPEL 194


>SB_37987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 243 LRGTDTVSPVSLALVVVDSMQTLARDHLQFVLIYSQLRRRGPL-DHGLYW 97
           +R  DT++PVS+ +V VD        +L+F ++   +  R P+     YW
Sbjct: 168 MRSYDTITPVSVLIVEVDVSGCHLNSNLKFPIVLGSVPYRPPMPPPQAYW 217


>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
          Length = 843

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 203 RASETGETVSVPRRLHGGRGSAAPLQR 283
           R +E+GET S P R H  +G+   + R
Sbjct: 26  RTAESGETTSSPSRFHDPQGNRVKITR 52


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 88  SSSKTTAPRSLTLLNISETISFLPLLGP 5
           SS     P +LTL+NI+ TI  +P  GP
Sbjct: 182 SSQIQENPGTLTLVNITNTIECVPKFGP 209


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 147 LGQTADDHEPVSASNPQQQEQVRLVRLCLYREGFTVD 257
           LG     +EPV+AS+P + +  R V  C Y  GFT+D
Sbjct: 544 LGHICTQYEPVNASDPTKGK--RPVLHCCY--GFTID 576


>SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4)
          Length = 487

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 231 LYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEE 395
           LYR  F  D   L+H      A+ LS  + G   S LS     +  ++E + H +
Sbjct: 18  LYRSSFDADPSTLQHLETNSGADLLSTPKSGY--SALSNACTQILQTVERTTHSD 70


>SB_27150| Best HMM Match : VWA (HMM E-Value=1.1e-13)
          Length = 600

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = +1

Query: 10  QVKAGKISSLKCSRASESEEQSSLKTNQHPVEAVVEGASSPELAID*DKLQMITSQCLHR 189
           Q  AG++  +KC+R  +     SL+  +  + A++  ++        DKL  +  +    
Sbjct: 232 QCSAGQL--VKCTRIRKDFPSMSLEERRRFISALIRVSTDQAFIKTYDKLTHLHPKFFDM 289

Query: 190 IHNNKSK*DW 219
           +HN K+   W
Sbjct: 290 VHNKKNFFPW 299


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 176 SVCIESTTTRASETGETVSVPRRLHGGRGSAAPLQRPGERG 298
           SVC  +T+ R++      S P+   G RGS +P +   ERG
Sbjct: 118 SVCNNATSPRSTHD-PVPSPPQGSRGSRGSHSPARSLSERG 157


>SB_1527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 34  SLKCSRASESEEQSSLKTNQHPVEAVVEGASSPE 135
           S+     +ES+EQ++ +T   P    VE  +SPE
Sbjct: 776 SISAQHLAESDEQAAEQTAHEPAREKVERITSPE 809


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,613
Number of Sequences: 59808
Number of extensions: 229307
Number of successful extensions: 659
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)