Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310E07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024876-9|AAF60887.2| 301|Caenorhabditis elegans Hypothetical ... 50 1e-06
AC024876-10|AAP31418.1| 193|Caenorhabditis elegans Hypothetical... 36 0.023
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ... 29 2.0
AF106584-2|AAC78222.2| 316|Caenorhabditis elegans Hypothetical ... 29 2.0
AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical ... 29 2.7
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 27 6.2
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 27 6.2
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 27 6.2
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 27 6.2
>AC024876-9|AAF60887.2| 301|Caenorhabditis elegans Hypothetical
protein Y94H6A.9a protein.
Length = 301
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +3
Query: 192 PQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVS 371
P +E + L L L+ +G +++ GPL DP EFL + +GEIP L Q +
Sbjct: 84 PSGRETISLT-LHLWSDGLSIEDGPLMSRQDPRTIEFLESVGKGEIPPSLVQQYPGKEID 142
Query: 372 LEDSRHEECPRHVV-KPQAFAGKGHMLGS 455
+ +RH E +V K + F G G LG+
Sbjct: 143 FKVNRHHE--EYVAPKMKPFGGSGVRLGN 169
>AC024876-10|AAP31418.1| 193|Caenorhabditis elegans Hypothetical
protein Y94H6A.9b protein.
Length = 193
Score = 35.5 bits (78), Expect = 0.023
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 282 DPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVV-KPQAFAGKGHMLGS 455
DP EFL + +GEIP L Q + + +RH E +V K + F G G LG+
Sbjct: 5 DPRTIEFLESVGKGEIPPSLVQQYPGKEIDFKVNRHHE--EYVAPKMKPFGGSGVRLGN 61
>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
protein 1, isoform a protein.
Length = 1147
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 246 FTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRH-EECPRHVVKP 419
F D+G +P +A F CI R E ++ V + + +S E+ P V+KP
Sbjct: 194 FITDSGMQISLVNPSDAGFYHCIVRNEYTNQTRKSPKPVLIIVTESNSTEKAPTEVIKP 252
>AF106584-2|AAC78222.2| 316|Caenorhabditis elegans Hypothetical
protein F54A5.3a protein.
Length = 316
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 240 EGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQ 350
+GFTV A P+RH S F+S R + ++ G+
Sbjct: 173 DGFTVPAPPMRHRSSLHRQSFVSNCRAPTVTEDVVGK 209
>AC006794-5|AAK68502.1| 821|Caenorhabditis elegans Hypothetical
protein Y50D4A.1 protein.
Length = 821
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 279 SDPENAEFLSCIRRGEIPSELSGQGVSVRV 368
SDPENAEFLS + + SG ++V++
Sbjct: 509 SDPENAEFLSIKEARKTVEDASGCKIAVKI 538
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 306 SGTPRSPGRCSGAADPRPP 250
SG P +PG+ GAA P PP
Sbjct: 190 SGAPGAPGQSGGAALPGPP 208
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 306 SGTPRSPGRCSGAADPRPP 250
SG P +PG+ GAA P PP
Sbjct: 190 SGAPGAPGQSGGAALPGPP 208
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 306 SGTPRSPGRCSGAADPRPP 250
SG P +PG+ GAA P PP
Sbjct: 190 SGAPGAPGQSGGAALPGPP 208
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 306 SGTPRSPGRCSGAADPRPP 250
SG P +PG+ GAA P PP
Sbjct: 190 SGAPGAPGQSGGAALPGPP 208
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 306 SGTPRSPGRCSGAADPRPP 250
SG P PGR GA+ P PP
Sbjct: 188 SGAPGQPGRSGGASLPGPP 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,113,637
Number of Sequences: 27780
Number of extensions: 164126
Number of successful extensions: 611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -