Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04210.1 68417.m00597 UBX domain-containing protein similar t...    66   1e-11
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    64   5e-11
At4g22150.1 68417.m03201 UBX domain-containing protein similar t...    62   2e-10
At3g21660.1 68416.m02731 UBX domain-containing protein contains ...    45   4e-05
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam...    30   0.82 
At1g02440.1 68414.m00192 ADP-ribosylation factor, putative simil...    29   1.9  
At1g02430.1 68414.m00190 ADP-ribosylation factor, putative simil...    28   4.4  
At3g27860.1 68416.m03474 PWWP domain-containing protein                27   5.8  
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic...    27   5.8  

>At4g04210.1 68417.m00597 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 303

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 53/150 (35%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
 Frame = +3

Query: 9   PSKGRKDIVSEMFKSVRERGAVVFEDEPTSSXXXXXXXXXXXXXXXLGQTADDHEPVSAS 188
           PSK  KD V E+F   R+ GAV    EP  S                G+     E V   
Sbjct: 56  PSK--KDDVDEIFNQARQLGAVEGPLEPPPSSRSFTGT---------GRLLSG-ENVPTG 103

Query: 189 NPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSEL--SGQGVSV 362
           N Q +  V    +  +  GFT+D GPLR   DPENA FL  IR+ E P EL  + +   V
Sbjct: 104 NQQPEPVVH--NIVFWSNGFTIDDGPLRKLDDPENASFLESIRKSECPKELEPADRRAPV 161

Query: 363 RVSLEDSRHEECPRHVVKPQAFAGKGHMLG 452
            V+L   + E+CP    +  +F G G  LG
Sbjct: 162 HVNLM-RKEEKCPERQKRRVSFQGVGRTLG 190


>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
 Frame = +3

Query: 183 ASNPQQQEQVRLVRLC----LYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQ 350
           +S+PQQQ+Q +  R+      +  GFTV+ GPLR +SDPENA F++ I R E PSEL   
Sbjct: 218 SSSPQQQQQEQPQRIMHTITFWLNGFTVNDGPLRGFSDPENAAFMNSISRSECPSELEPA 277

Query: 351 GVSVRVSLEDSRHEECPRHVVKPQ-AFAGKGHMLGS 455
              + V ++  R  E      KP+  F G G  LG+
Sbjct: 278 DKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGA 313


>At4g22150.1 68417.m03201 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 302

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 36/87 (41%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
 Frame = +3

Query: 198 QQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELS--GQGVSVRVS 371
           QQ +  +  +  +  GFTVD GPLR   DPENA FL  IR+ E P EL    +   V V+
Sbjct: 109 QQPEPVIHNIIFWSNGFTVDDGPLRKLDDPENASFLDSIRKSECPKELEPVDKRAPVHVN 168

Query: 372 LEDSRHEECPRHVVKPQAFAGKGHMLG 452
           L   R E+CP       +F G G  LG
Sbjct: 169 LM-RRDEKCPEKEKLKVSFQGVGRTLG 194


>At3g21660.1 68416.m02731 UBX domain-containing protein contains
           Pfam profile: PF00789 UBX domain
          Length = 435

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +3

Query: 171 EPVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQ 350
           E VS+   ++ ++V    +  +  GFTVD   L+   DPENA FL  I   E P EL   
Sbjct: 137 ETVSSELEEEPQKVFTHTVTSWSNGFTVDDSSLKTLDDPENATFLEIISSMESPRELGQV 196

Query: 351 GVSVR-VSLEDSRHEE 395
            V V+ +S E+  + E
Sbjct: 197 RVQVKIISREEENYTE 212



 Score = 37.5 bits (83), Expect = 0.005
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +3

Query: 150 GQTADDHEPVSASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFL 305
           G+T D  E        Q  +V    + ++R GFTVD  P +   DPENA FL
Sbjct: 249 GET-DSAELQEQQQEDQPYEVVTYTVTIWRNGFTVDDDPFKSLDDPENAAFL 299


>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
           beta-monooxygenase N-terminal domain-containing protein
           contains Pfam PF03351: DOMON domain
          Length = 907

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 252 VDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLE 377
           V AGP  HY +P N   +  I + E P     +GV V+ S+E
Sbjct: 393 VTAGPSVHYPNPPNPSKVLYINKKEAPVLKVERGVPVKFSIE 434


>At1g02440.1 68414.m00192 ADP-ribosylation factor, putative similar
           to ADP-ribosylation factor GB:AAA32729 GI:166586 from
           (Arabidopsis thaliana)
          Length = 190

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 279 SDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPR--HVVKPQAFAGKG 440
           S P+NA  L    + E+P  +S   +S ++ L   R +   R  HV    AF+G G
Sbjct: 120 SVPDNAPVLVYGNKHEVPGAMSASEISNKLDLTSLRKKNWQRNWHVQSSCAFSGDG 175


>At1g02430.1 68414.m00190 ADP-ribosylation factor, putative similar
           to ADP-ribosylation factor GI:166586 from [Arabidopsis
           thaliana]
          Length = 157

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +3

Query: 279 SDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPR--HVVKPQAFAGKG 440
           S P+N   L    + E+P  +S   +S ++ L   R +   R  HV    AF+G G
Sbjct: 87  SVPDNVAVLVFGNKHEVPGAMSASEISNKLDLTSLRQKNWQRNWHVQSSCAFSGDG 142


>At3g27860.1 68416.m03474 PWWP domain-containing protein 
          Length = 652

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 366 VSLEDSRHEECPRHVVKPQAFAGKGHMLG 452
           + LED  HE C R + K   FA K    G
Sbjct: 248 IGLEDKEHESCQRLLRKCSGFASKKRKCG 276


>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
           to chromomethylase CMT3 [Arabidopsis thaliana]
           GI:14583092, GI:14647157
          Length = 839

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 58  ESEEQSSLKTNQHPVEAVVEGASSPELAID*DKLQMITSQCLHR 189
           ESE +S+      P+E     ASS +   D +K+++I ++C +R
Sbjct: 57  ESEAKSTWPDRYKPIEVQPPKASSRKKTKDDEKVEIIRARCHYR 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,881
Number of Sequences: 28952
Number of extensions: 154151
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)