Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310E04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo... 52 7e-08
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 29 0.42
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 29 0.56
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 29 0.56
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 28 0.73
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 27 2.2
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 2.2
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 26 3.0
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 26 3.0
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 26 3.9
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 26 3.9
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 26 3.9
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 5.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 25 5.2
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 5.2
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 6.8
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 25 6.8
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 6.8
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 6.8
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.8
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p... 25 9.0
>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 51.6 bits (118), Expect = 7e-08
Identities = 33/100 (33%), Positives = 50/100 (50%)
Frame = +2
Query: 218 QKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGVPEP 397
+K KK + L+ KEKK L+ +P+ + Y ++ +W YI EV+A G
Sbjct: 62 RKESVASKKRKKLSSKEKKKLQLNVVPKIA-DYSQFKHLHSMWCSYILEVIAGCTG---- 116
Query: 398 NSKNWETLTLXLYKADYHGCMLTVVRSKCPSFISKTGICI 517
E+L L KA+Y G + V+RSK + + GICI
Sbjct: 117 -----ESLMAKLAKAEYQGAYMQVLRSKSTTRVGLEGICI 151
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 29.1 bits (62), Expect = 0.42
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 143 PXNEVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLR 283
P K+D E+++ F KK ++K++ KK+ + +KEK+ R
Sbjct: 264 PAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKER 310
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 28.7 bits (61), Expect = 0.56
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 32 NLK*RRVLHFVVNMEETTDSF--NQQAANSIINF-LKTNVPXNEVQKIDSELKTELVFAK 202
NLK R LH V +E++ N + N N + +VP E QK ELK +L+
Sbjct: 22 NLK-RARLHRSVREQESSSEVHANPEPDNQDSNAEILIDVPKEERQKRKQELKDQLLKEN 80
Query: 203 KRSMQQKRKPIKKKTRCLTRKEKK 274
+ S+ K+K K+ + + K KK
Sbjct: 81 EGSISSKKK--KRLDKYIENKLKK 102
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 28.7 bits (61), Expect = 0.56
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 152 EVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEK 271
E+Q E + EL K+ ++ KP KKK + ++KEK
Sbjct: 211 ELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKKEK 250
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 28.3 bits (60), Expect = 0.73
Identities = 22/88 (25%), Positives = 35/88 (39%)
Frame = +2
Query: 143 PXNEVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYED 322
P EVQ+ + E + A+ S+ K+ C T+ + K YN+ R +
Sbjct: 103 PNLEVQQTEKEKDVDSASAENESINSSSSSSKE---CSTQTQSK---HYNLHRDIFQMRI 156
Query: 323 VVQMNKIWLEYITEVLAMDDGVPEPNSK 406
N+ E +L G+P P SK
Sbjct: 157 RYHANRAAAEKTARLLQSGQGLPSPPSK 184
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +2
Query: 350 EYITEVLAMDDGVPEPNSKNWETLTLXLYKADYHGCMLTVVR 475
E+ + ++++ + E ++W+TL L ++ + GC ++V R
Sbjct: 169 EWQQSIKSIEEELVEKYQQSWKTLFLKKPRSRFDGCYISVCR 210
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +2
Query: 134 TNVPXNEVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVK 313
T+ + ++ +++ ++V KK+ K K ++ +KEKK + R S +
Sbjct: 431 TDAVTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKKEKKDKKHKKSKRKSEE 490
Query: 314 YED 322
ED
Sbjct: 491 SED 493
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 56 HFVVNMEETTDSFNQQAANSIINFLKTNVPXNEVQKIDSELKTELVFAKKRSMQQ-KRKP 232
H+ ++ DSFN A + NFL P ++ D+++K V KK+ ++ R
Sbjct: 318 HYYAAAAQSFDSFNIDRARLLRNFLIE--PLRKI--YDTDIKN--VSTKKKDFEETSRDY 371
Query: 233 IKKKTRCLTRKEKKT 277
+R L++ EK+T
Sbjct: 372 YTSLSRYLSKSEKET 386
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = +2
Query: 149 NEVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVV 328
N + + + K +L+F K+R Q I K L K+K I + ++ Y
Sbjct: 380 NVMDYVTKQRKYQLLFDKRRIRQALLTKIATKCFQLLNKQKSVHDPTYITQKTMSYRQSA 439
Query: 329 QMNKIWLEYITEVL 370
+ K +EY VL
Sbjct: 440 LLQKQRIEYEAAVL 453
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +2
Query: 65 VNMEETTDSFNQQAANSIINFLK-TNVPXNEV-QKIDSELKTELVFAKKRSMQQKR---K 229
V E+ T + QAA ++NFL + P ++ +K+ ++ T L SM KR
Sbjct: 234 VEFEDGTPATTAQAAKDVVNFLHWASEPELDIRKKMGFQVITVLTILTALSMWYKRFKWT 293
Query: 230 PIKKK 244
PIK +
Sbjct: 294 PIKNR 298
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 25.8 bits (54), Expect = 3.9
Identities = 22/94 (23%), Positives = 39/94 (41%)
Frame = +2
Query: 68 NMEETTDSFNQQAANSIINFLKTNVPXNEVQKIDSELKTELVFAKKRSMQQKRKPIKKKT 247
++ E T S N+ ++ + N ++ + L AKK +QK P+ +K
Sbjct: 15 SVREATFSINESFGGRLLTEEEDVFEQNAWDHVEWD-DEHLALAKKCIEEQKLYPVTEKD 73
Query: 248 RCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWL 349
+T E+ +FY K E MN+ W+
Sbjct: 74 AYMTHPERYWDQFYG------KNEGKFFMNRRWI 101
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 152 EVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCL 256
EV++ + L F +KR+++ K+KTRCL
Sbjct: 3 EVERTRQSSSSLLTFKRKRALEACDSCRKQKTRCL 37
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 95 NQQAANSIINFLKTNVPXNEVQKIDSELKTELVFAKKRSMQQKRK 229
N A S+ N +K +E Q+ ELK E+ +AK +S+ +R+
Sbjct: 106 NNAALESLNNSIKQK--QDEYQRKLEELKKEIEYAKTKSLFHERE 148
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/67 (22%), Positives = 36/67 (53%)
Frame = +2
Query: 155 VQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQM 334
V+ +D+E EL+ A+++ ++++R KK + +EKK + + + ++ +M
Sbjct: 643 VKLVDAE---ELIAAREQKLEEERAKQAKKAQAKAEQEKKQVE--RVMKGKTSPSEMFKM 697
Query: 335 NKIWLEY 355
K +L +
Sbjct: 698 FKEYLSF 704
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +2
Query: 200 KKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMD 379
KKR Q+ + + TRKE++ LR N ++ + ++++I + + L +
Sbjct: 325 KKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKH--RISRIPMSTVNAFLRAE 382
Query: 380 DGVPE 394
D +PE
Sbjct: 383 DSIPE 387
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 158 QKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKK 274
+ ++S K E AKK ++K++ K+K +KEKK
Sbjct: 429 KSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKK 467
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 152 EVQKIDSELKTELVFAKKRSMQQKRKPIK-KKTRCLTRKEK--KTLRFYNIPRHSVKYED 322
E Q+ ++ + E+ ++ K+KP++ KK + L E+ K + YN+PR D
Sbjct: 164 EKQRKEAIARGEISDSEDEKHTVKQKPLREKKKKPLKSSEEISKDMGSYNLPRFLASLID 223
Query: 323 VVQMNKIWLEYIT 361
+ +E++T
Sbjct: 224 ASLNDTKEIEFVT 236
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 29 NNLK*RRVLHFVVNMEETTDSFNQQAANSIINFLKTN 139
NN+ + F + M+ DS AA SI+NF+ TN
Sbjct: 45 NNVLRHWKILFSLFMQTCGDSVQGNAAFSILNFMTTN 81
>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 488 SDIWNGLPLTCIHDSPLYT 432
+++WN L C+H P Y+
Sbjct: 10 NEVWNDLEKGCLHSCPSYS 28
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 95 NQQAANSIINFLKTNVPXNEVQKIDSELKTELVFAKKRSMQQKRKPIKK-KTRCLTRKEK 271
++ N FL + N +K+D +KT+LV + +Q+ + + + + L ++ +
Sbjct: 785 SRDLVNMAKRFLSSLFSVN-TRKMDVNVKTDLVIGENIELQRYLQQLTQYSEKFLNKESE 843
Query: 272 KTLRFYNIPRHSVK 313
T+ N P +++
Sbjct: 844 NTVGLLNAPGENIE 857
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -1
Query: 488 SDIWNGLPLTCIHDSPLYT 432
+++WN L C+H P Y+
Sbjct: 10 NEVWNDLEKGCLHSCPSYS 28
>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 289
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -1
Query: 476 NGLPLTCIHDSPLYTXLRLTFPN 408
NG P++ HD PLY T N
Sbjct: 24 NGTPISSWHDIPLYANAEKTILN 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,398
Number of Sequences: 5004
Number of extensions: 42446
Number of successful extensions: 141
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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