Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310E04f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y18863-1|CAB39167.1| 220|Homo sapiens Pop4 protein protein. 74 3e-13
CR536569-1|CAG38806.1| 220|Homo sapiens POP4 protein. 74 3e-13
BC006098-1|AAH06098.1| 220|Homo sapiens processing of precursor... 74 3e-13
BC004438-1|AAH04438.1| 220|Homo sapiens processing of precursor... 74 3e-13
AF001176-1|AAD00893.2| 220|Homo sapiens ribonuclease P protein ... 73 6e-13
BC047895-1|AAH47895.1| 449|Homo sapiens CLIP1 protein protein. 31 2.4
BC026028-1|AAH26028.1| 541|Homo sapiens Unknown (protein for IM... 30 4.3
AE006463-8|AAK61228.1| 156|Homo sapiens 60S ribosomal protein L... 30 4.3
AK094515-1|BAC04372.1| 501|Homo sapiens protein ( Homo sapiens ... 29 7.5
AF327442-1|AAL37427.1| 4024|Homo sapiens ciliary dynein heavy ch... 29 7.5
AC104600-1|AAY24051.1| 1270|Homo sapiens unknown protein. 29 7.5
AB023161-1|BAA76788.2| 4031|Homo sapiens KIAA0944 protein protein. 29 7.5
BC051789-1|AAH51789.1| 525|Homo sapiens LOC129293 protein protein. 29 9.9
BC031825-1|AAH31825.1| 560|Homo sapiens TAOK2 protein protein. 29 9.9
>Y18863-1|CAB39167.1| 220|Homo sapiens Pop4 protein protein.
Length = 220
Score = 74.1 bits (174), Expect = 3e-13
Identities = 45/163 (27%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Frame = +2
Query: 44 RRVLHFVVNMEETTDSFNQ----QAANSIIN-FLKTNVPXNEVQKIDSELKTELVFAKKR 208
+ V++ ++ +E DS Q Q A + + FLK + P Q + +L+ + V +
Sbjct: 2 KSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYF 61
Query: 209 SMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGV 388
+ + KRK KKK + L+ ++++ LR ++I +Y + ++++W +YI ++ + G+
Sbjct: 62 T-RHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCS---GL 117
Query: 389 PEPNSKNWETLTLXLYKADYHGCMLTVVRSKCPSFISKTGICI 517
+P+++ + + L KAD HG +++V +SKCPS++ TGI +
Sbjct: 118 -KPDTQP-QMIQAKLLKADLHGAIISVTKSKCPSYVGITGILL 158
>CR536569-1|CAG38806.1| 220|Homo sapiens POP4 protein.
Length = 220
Score = 74.1 bits (174), Expect = 3e-13
Identities = 45/163 (27%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Frame = +2
Query: 44 RRVLHFVVNMEETTDSFNQ----QAANSIIN-FLKTNVPXNEVQKIDSELKTELVFAKKR 208
+ V++ ++ +E DS Q Q A + + FLK + P Q + +L+ + V +
Sbjct: 2 KSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYF 61
Query: 209 SMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGV 388
+ + KRK KKK + L+ ++++ LR ++I +Y + ++++W +YI ++ + G+
Sbjct: 62 T-RHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCS---GL 117
Query: 389 PEPNSKNWETLTLXLYKADYHGCMLTVVRSKCPSFISKTGICI 517
+P+++ + + L KAD HG +++V +SKCPS++ TGI +
Sbjct: 118 -KPDTQP-QMIQAKLLKADLHGAIISVTKSKCPSYVGITGILL 158
>BC006098-1|AAH06098.1| 220|Homo sapiens processing of precursor 4,
ribonuclease P/MRP subunit (S. cerevisiae) protein.
Length = 220
Score = 74.1 bits (174), Expect = 3e-13
Identities = 45/163 (27%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Frame = +2
Query: 44 RRVLHFVVNMEETTDSFNQ----QAANSIIN-FLKTNVPXNEVQKIDSELKTELVFAKKR 208
+ V++ ++ +E DS Q Q A + + FLK + P Q + +L+ + V +
Sbjct: 2 KSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYF 61
Query: 209 SMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGV 388
+ + KRK KKK + L+ ++++ LR ++I +Y + ++++W +YI ++ + G+
Sbjct: 62 T-RHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCS---GL 117
Query: 389 PEPNSKNWETLTLXLYKADYHGCMLTVVRSKCPSFISKTGICI 517
+P+++ + + L KAD HG +++V +SKCPS++ TGI +
Sbjct: 118 -KPDTQP-QMIQAKLLKADLHGAIISVTKSKCPSYVGITGILL 158
>BC004438-1|AAH04438.1| 220|Homo sapiens processing of precursor 4,
ribonuclease P/MRP subunit (S. cerevisiae) protein.
Length = 220
Score = 74.1 bits (174), Expect = 3e-13
Identities = 45/163 (27%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Frame = +2
Query: 44 RRVLHFVVNMEETTDSFNQ----QAANSIIN-FLKTNVPXNEVQKIDSELKTELVFAKKR 208
+ V++ ++ +E DS Q Q A + + FLK + P Q + +L+ + V +
Sbjct: 2 KSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYF 61
Query: 209 SMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGV 388
+ + KRK KKK + L+ ++++ LR ++I +Y + ++++W +YI ++ + G+
Sbjct: 62 T-RHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCS---GL 117
Query: 389 PEPNSKNWETLTLXLYKADYHGCMLTVVRSKCPSFISKTGICI 517
+P+++ + + L KAD HG +++V +SKCPS++ TGI +
Sbjct: 118 -KPDTQP-QMIQAKLLKADLHGAIISVTKSKCPSYVGITGILL 158
>AF001176-1|AAD00893.2| 220|Homo sapiens ribonuclease P protein
subunit p29 protein.
Length = 220
Score = 72.9 bits (171), Expect = 6e-13
Identities = 45/163 (27%), Positives = 92/163 (56%), Gaps = 5/163 (3%)
Frame = +2
Query: 44 RRVLHFVVNMEETTDSFNQ----QAANSIIN-FLKTNVPXNEVQKIDSELKTELVFAKKR 208
+ V++ ++ +E DS Q Q A + + FLK P Q + +L+ + V +
Sbjct: 2 KSVIYHALSQKEANDSDVQPSGAQRAEAFVRAFLKRTSPRMSPQAREDQLQRKAVVLEYF 61
Query: 209 SMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGV 388
+ + KRK KKK + L+ ++++ LR ++I +Y + ++++W +YI ++ + G+
Sbjct: 62 T-RHKRKEKKKKAKGLSARQRRELRLFDIKPEQQRYSLFLPLHELWKQYIRDLCS---GL 117
Query: 389 PEPNSKNWETLTLXLYKADYHGCMLTVVRSKCPSFISKTGICI 517
+P+++ + + L KAD HG +++V +SKCPS++ TGI +
Sbjct: 118 -KPDTQP-QMIQAKLLKADLHGAIISVTKSKCPSYVGITGILL 158
>BC047895-1|AAH47895.1| 449|Homo sapiens CLIP1 protein protein.
Length = 449
Score = 31.1 bits (67), Expect = 2.4
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 161 KIDSELKTELVFAKKRSMQQKRKPIKKKTR 250
KID LK L+++KK+ ++K+K KKK +
Sbjct: 416 KIDHRLKCLLIYSKKKKKKKKKKKKKKKKK 445
>BC026028-1|AAH26028.1| 541|Homo sapiens Unknown (protein for
IMAGE:3836580) protein.
Length = 541
Score = 30.3 bits (65), Expect = 4.3
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 92 FNQQAANSIINF-LKTNVPXNEVQKIDSELKTELVFAKKRS---MQQKRKPIKKKTRCLT 259
+NQ + + + +KT VP + K K ++F K+R+ Q+++K ++ + +
Sbjct: 266 YNQPSDTKVYHENIKTGVPARRMMKNQVMRKKLILFFKRRNHARKQREQKICQRYDQLME 325
Query: 260 RKEKKTLRFYNIPRHSVK 313
EKK R N PR K
Sbjct: 326 AWEKKVDRIENNPRRKAK 343
>AE006463-8|AAK61228.1| 156|Homo sapiens 60S ribosomal protein L23A
like protein.
Length = 156
Score = 30.3 bits (65), Expect = 4.3
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 167 DSELKTELVFAKKRSMQQKRKPIKKKTR-CLTRKEKKTLRFYNIPRHSVK 313
++E K + + AKK +++ IKKKTR LT + KTLR P + K
Sbjct: 14 EAEAKAKALKAKKAALKGVHSHIKKKTRTSLTFQRPKTLRRRRRPEYPWK 63
>AK094515-1|BAC04372.1| 501|Homo sapiens protein ( Homo sapiens
cDNA FLJ37196 fis, clone BRALZ2005888. ).
Length = 501
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 266 EKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVL 370
EK LR+Y H + + V M WLE++ +++
Sbjct: 158 EKDILRYYYYIHHGIDTDHVAPMEDSWLEHVLDLV 192
>AF327442-1|AAL37427.1| 4024|Homo sapiens ciliary dynein heavy chain
7 protein.
Length = 4024
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 266 EKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVL 370
EK LR+Y H + + V M WLE++ +++
Sbjct: 158 EKDILRYYYYIHHGIDTDHVAPMEDSWLEHVLDLV 192
>AC104600-1|AAY24051.1| 1270|Homo sapiens unknown protein.
Length = 1270
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 266 EKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVL 370
EK LR+Y H + + V M WLE++ +++
Sbjct: 153 EKDILRYYYYIHHGIDTDHVAPMEDSWLEHVLDLV 187
>AB023161-1|BAA76788.2| 4031|Homo sapiens KIAA0944 protein protein.
Length = 4031
Score = 29.5 bits (63), Expect = 7.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 266 EKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVL 370
EK LR+Y H + + V M WLE++ +++
Sbjct: 165 EKDILRYYYYIHHGIDTDHVAPMEDSWLEHVLDLV 199
>BC051789-1|AAH51789.1| 525|Homo sapiens LOC129293 protein protein.
Length = 525
Score = 29.1 bits (62), Expect = 9.9
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +2
Query: 62 VVNMEETTDSFNQQAANSIINFLKTNVPXNE---VQKIDSELKTELVFAKKRSMQQKRKP 232
V +EE N + + NF+ +P E Q+IDS L+ EL++ + + ++ K
Sbjct: 275 VEKVEEQCHPLNGLNFSQVPNFINATLPPQERITAQEIDSYLRRELIYKRNERIGKRVKA 334
Query: 233 I 235
+
Sbjct: 335 L 335
>BC031825-1|AAH31825.1| 560|Homo sapiens TAOK2 protein protein.
Length = 560
Score = 29.1 bits (62), Expect = 9.9
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 128 LKTNVPXNEVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKK 274
LK N++ + + E K + KK+ ++K+K KKK + +K+KK
Sbjct: 507 LKKKTNTNKISERNCEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 555
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,515,082
Number of Sequences: 237096
Number of extensions: 1374872
Number of successful extensions: 6605
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6425
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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