Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310E04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81034-5|CAB02730.1| 198|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z66498-5|CAA91294.2| 513|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z54327-14|CAA91124.2| 513|Caenorhabditis elegans Hypothetical p... 29 2.0
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 2.0
U13643-2|AAN65298.1| 354|Caenorhabditis elegans Hypothetical pr... 28 4.7
U13643-1|AAA21083.1| 427|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF040645-14|AAB94979.1| 779|Caenorhabditis elegans Hypothetical... 27 6.2
AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin p... 27 6.2
U29537-9|AAK31506.2| 161|Caenorhabditis elegans Hypothetical pr... 27 8.1
U29537-8|ABS83848.1| 258|Caenorhabditis elegans Hypothetical pr... 27 8.1
AC024817-28|AAY86305.1| 103|Caenorhabditis elegans Hypothetical... 27 8.1
>Z81034-5|CAB02730.1| 198|Caenorhabditis elegans Hypothetical
protein C15C6.4 protein.
Length = 198
Score = 38.7 bits (86), Expect = 0.002
Identities = 29/100 (29%), Positives = 47/100 (47%)
Frame = +2
Query: 221 KRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMNKIWLEYITEVLAMDDGVPEPN 400
KRK K + LTR R + + K+ D+V MN W +Y E L N
Sbjct: 36 KRKSKKTEKTNLTRG-----RLTEDDKKAFKFADIVPMNTDWQKYFRERLG--------N 82
Query: 401 SKNWETLTLXLYKADYHGCMLTVVRSKCPSFISKTGICIM 520
+ + + K+DYHG +LT+ ++ P+ I +GI ++
Sbjct: 83 HFSSTKIEKTILKSDYHGALLTIWLAENPTQIGISGIVVL 122
>Z66498-5|CAA91294.2| 513|Caenorhabditis elegans Hypothetical
protein C26D10.6a protein.
Length = 513
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 401 SKNWETLTLXLYKADYHGCMLTVVRSK 481
S+NWE++ L Y YHG ++ V+ +
Sbjct: 261 SRNWESMLLGTYHRVYHGSWISSVKGR 287
>Z54327-14|CAA91124.2| 513|Caenorhabditis elegans Hypothetical
protein C26D10.6a protein.
Length = 513
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 401 SKNWETLTLXLYKADYHGCMLTVVRSK 481
S+NWE++ L Y YHG ++ V+ +
Sbjct: 261 SRNWESMLLGTYHRVYHGSWISSVKGR 287
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +2
Query: 86 DSFNQQAANSIINFL----KTNVPXNEVQKI-DSELKTELVFAKKRSMQQKRKPIKKKTR 250
+ NQ +S+++F +T+ NEV + D + K+EL+ + +++QKR +
Sbjct: 33 EDINQFLDDSLLSFKEGQGRTDDAWNEVVFLNDKKFKSELLVSNSATVRQKRSDLPAHCN 92
Query: 251 CLTRKE 268
CL++ +
Sbjct: 93 CLSQNQ 98
>U13643-2|AAN65298.1| 354|Caenorhabditis elegans Hypothetical
protein T07E3.4b protein.
Length = 354
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 149 NEVQK-IDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDV 325
NE +K + S++ T K + Q + + +++ RC R+ +L YN+ + K E
Sbjct: 259 NESEKQLRSQVCTVKRCPKVKGSQFESECLRRGLRCKNRRGSGSLTLYNVQEENTKREFT 318
Query: 326 VQMNKIWLEYITEVLAMDDGVPEPNSKNWETLTL 427
+ + + + + E L + E N N LT+
Sbjct: 319 IALAALEDKELAEKLK----ISEQNCNNNNLLTV 348
>U13643-1|AAA21083.1| 427|Caenorhabditis elegans Hypothetical
protein T07E3.4a protein.
Length = 427
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 149 NEVQK-IDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDV 325
NE +K + S++ T K + Q + + +++ RC R+ +L YN+ + K E
Sbjct: 332 NESEKQLRSQVCTVKRCPKVKGSQFESECLRRGLRCKNRRGSGSLTLYNVQEENTKREFT 391
Query: 326 VQMNKIWLEYITEVLAMDDGVPEPNSKNWETLTL 427
+ + + + + E L + E N N LT+
Sbjct: 392 IALAALEDKELAEKLK----ISEQNCNNNNLLTV 421
>AF040645-14|AAB94979.1| 779|Caenorhabditis elegans Hypothetical
protein F52C6.14 protein.
Length = 779
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 65 VNMEETTDSFNQQAANSIINFLKTNVPXNE 154
V ME + NSIINFLK N E
Sbjct: 539 VRMEGDNKEYTHSRCNSIINFLKENTHCEE 568
>AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin
protein 1 protein.
Length = 184
Score = 27.5 bits (58), Expect = 6.2
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +2
Query: 158 QKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQMN 337
Q +D E + ++ K S Q+ K K++ RC R R + R + +MN
Sbjct: 17 QDLDMERENDMDQNSKNSTQKPVKREKRRYRCRKRSPATIERAKTVRRDKANARERRRMN 76
Query: 338 KI--WLEYITEVL-AMDDGVPEPNSKNWETL 421
+ LE++ +L A+ D EP ETL
Sbjct: 77 SLNDALEHLRGILPALPD---EPKMTKIETL 104
>U29537-9|AAK31506.2| 161|Caenorhabditis elegans Hypothetical
protein F28B12.1a protein.
Length = 161
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 272 KTLRFYNIPRHSVKYEDVVQMNKIWLEYI 358
+TLR N+P YED + KI+LE I
Sbjct: 76 RTLRCVNLPELVEHYEDQLTAQKIYLEKI 104
>U29537-8|ABS83848.1| 258|Caenorhabditis elegans Hypothetical
protein F28B12.1b protein.
Length = 258
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 272 KTLRFYNIPRHSVKYEDVVQMNKIWLEYI 358
+TLR N+P YED + KI+LE I
Sbjct: 173 RTLRCVNLPELVEHYEDQLTAQKIYLEKI 201
>AC024817-28|AAY86305.1| 103|Caenorhabditis elegans Hypothetical
protein Y54G2A.49 protein.
Length = 103
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 167 DSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKK 274
DSE KT++ K+R ++ RK KKK +RK ++
Sbjct: 23 DSEKKTKMKKKKRRKTKKHRKRRKKKPSRGSRKRRE 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,020
Number of Sequences: 27780
Number of extensions: 237304
Number of successful extensions: 759
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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