Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.3  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   4.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   4.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 200 KKRSMQQKRKPIKKKTR 250
           K+R+   KRKPI+KK +
Sbjct: 10  KRRATGGKRKPIRKKRK 26


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 290 NIPRHSVKYEDVVQMNKIWLEYITEV 367
           N   H+V+ +DVVQ + + +  I EV
Sbjct: 379 NYTCHAVRNQDVVQTHVLTIHTIPEV 404


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 98  QQAANSIINFLKTNVP 145
           +  AN ++N+LKT  P
Sbjct: 80  KHTANKVVNYLKTKRP 95


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 98  QQAANSIINFLKTNVP 145
           +  AN ++N+LKT  P
Sbjct: 80  KHTANKVVNYLKTKRP 95


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 387 TPSSIARTSVIYSN 346
           TPS  ++TSV YSN
Sbjct: 361 TPSKCSQTSVHYSN 374


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 69  TWRKRQIHSINRLQIQS 119
           TW+  +  SIN ++++S
Sbjct: 96  TWKSSEFDSINSIRVKS 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,418
Number of Sequences: 438
Number of extensions: 3035
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)