Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310E04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29640.1 68415.m03601 josephin family protein contains Pfam d... 30 1.1
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p... 29 1.4
At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family pr... 29 1.9
At3g23840.1 68416.m02997 transferase family protein low similari... 29 2.5
At4g03160.1 68417.m00431 hypothetical protein 28 4.4
At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein / a... 28 4.4
At5g56980.1 68418.m07112 expressed protein non-consensus CG dono... 27 5.8
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 27 5.8
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 27 5.8
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 27 7.7
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 27 7.7
At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C... 27 7.7
>At2g29640.1 68415.m03601 josephin family protein contains Pfam
domain PF02099: Josephin; similar to Josephin-like
protein (Swiss-Prot:O82391) [Arabidopsis thaliana]
Length = 360
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 50 VLHFVVNMEETTDSFNQQAANSIINFLKTNVPXNE 154
+LH + N+ + D+F +++ NSI L+TN P E
Sbjct: 19 LLHCLNNLFQDKDAFTKESLNSIAEKLETNDPNKE 53
>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
protein similar to brahma associated protein 60 kDa
[Drosophila melanogaster] GI:3378134, SWI/SNF-related,
matrix-associated, actin-dependent regulator of
chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
profile PF02201: BAF60b domain of the SWIB complex
Length = 534
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 86 LSFPPCLQRNVRLVFISNY*NQNN 15
L PPC+Q+ +R+ +++ NQNN
Sbjct: 191 LKNPPCIQKTLRIYVFNSFANQNN 214
>At2g42300.1 68415.m05236 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 327
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/93 (23%), Positives = 41/93 (44%)
Frame = +2
Query: 20 FDFNNLK*RRVLHFVVNMEETTDSFNQQAANSIINFLKTNVPXNEVQKIDSELKTELVFA 199
F N+L R F V E +F+ + ANS+ + N+ + + +++ E
Sbjct: 91 FPSNSLLLDRAARFSVIATEQNGNFSGETANSLPSNPGANLDRVKAEPAETDSMVEN--Q 148
Query: 200 KKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIP 298
+ KRK +KK + T+K K ++ +P
Sbjct: 149 NQSYSSGKRKEREKKVKSSTKKNKSSVESDKLP 181
>At3g23840.1 68416.m02997 transferase family protein low similarity
to hypersensitivity-related gene [Nicotiana tabacum]
GI:1171577, acetyl-CoA:benzylalcohol acetyltranferase
[Clarkia concinna] GI:6166330; contains Pfam profile
PF02458: Transferase family
Length = 420
Score = 28.7 bits (61), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 442 GLSWMHVNGSPFQMSELY 495
GLSW H+ G PF +S +
Sbjct: 157 GLSWAHIMGDPFSLSHFF 174
>At4g03160.1 68417.m00431 hypothetical protein
Length = 192
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/75 (21%), Positives = 35/75 (46%)
Frame = +2
Query: 128 LKTNVPXNEVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHS 307
++TN + +K+ +L V + + ++P+KK L + EK + N+ +
Sbjct: 53 MQTNENKGKKRKVAEQLMDSDVKDNQYRLMLGKEPVKKMMDALGKTEKLGTKGLNVSVYG 112
Query: 308 VKYEDVVQMNKIWLE 352
E+ + KIW++
Sbjct: 113 PNGENHKMVLKIWIK 127
>At1g75940.1 68414.m08820 glycosyl hydrolase family 1 protein /
anther-specific protein ATA27 contains Pfam PF00232 :
Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
6-phospho-beta-galactosidase; identical to
anther-specific protein ATA27 (GI:2746341) [Arabidopsis
thaliana]
Length = 535
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 341 IWLEYITEVLAMDDGVPEPNSKNWETLTLXLYKADY 448
+ + Y T V A+ D P+P+ +W++ +L ++ Y
Sbjct: 346 VGINYYTSVFALHDEEPDPSQPSWQSDSLVDWEPRY 381
>At5g56980.1 68418.m07112 expressed protein non-consensus CG donor
splice site at exon 1, GA donor splice site at exon 3
Length = 379
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 122 NFLKTNVPXNEVQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEK 271
+F +++ ++ Q D L E RS + +KP+KKK + LT+ K
Sbjct: 252 SFYRSDPDLDQKQNPDPVLHEE--HKHVRSKSESKKPVKKKKKALTKMTK 299
>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
identical to DNA repair-recombination protein GI:7110148
from [Arabidopsis thaliana]
Length = 1316
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +2
Query: 155 VQKIDSELKTELVFAKKRSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHSVKYEDVVQM 334
VQK+D+E+ + + K Q + IK R KE++ ++ +P + ED ++
Sbjct: 249 VQKVDAEVHNKEMMLKDLRKLQDQVSIKTAERSTLFKEQQR-QYAALPEEN---EDTIEE 304
Query: 335 NKIWLEYITEVLAM 376
K W E LA+
Sbjct: 305 LKEWKSKFEERLAL 318
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 131 KTNVPXNEVQKIDSELKTELVFAKKRSMQQKRKPIKKKTR 250
K V E K E K+E AKK+ ++KRK KK+T+
Sbjct: 316 KREVVQAEEAKGGGEQKSESKKAKKQDKEKKRKKDKKQTK 355
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 206 RSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHS 307
R + +++ P +K T+ TRKEKK + N P+ +
Sbjct: 23 RKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRA 56
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 206 RSMQQKRKPIKKKTRCLTRKEKKTLRFYNIPRHS 307
R + +++ P +K T+ TRKEKK + N P+ +
Sbjct: 23 RKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRA 56
>At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase type 2C
GI:4336436 from [Lotus japonicus]
Length = 371
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 292 IVKSKCFFLFTSQTSGFFLDWFTFL 218
+V+S FFLF SQT F+ ++ FL
Sbjct: 25 LVRSFFFFLFNSQTISSFIIFYLFL 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,582,439
Number of Sequences: 28952
Number of extensions: 205800
Number of successful extensions: 595
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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