Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS310E02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) 25 1.0
SB_52928| Best HMM Match : PKD (HMM E-Value=0) 28 5.4
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 28 5.4
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 27 7.1
SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7) 27 9.4
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25) 27 9.4
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -2
Query: 268 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGSHIPSSDGQHCRSRR*GCCCTVSPRGL 89
C+ CS++ C SC GC L+ + + C+SR G CT S G
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGS--GC 281
Query: 88 G*KCP 74
KCP
Sbjct: 282 DVKCP 286
>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
Length = 290
Score = 25.4 bits (53), Expect(2) = 1.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 202 VNNLIIDKRRNTMEYCYKLWVGNGQEIV 285
+++L++ +++ YC+ NGQ+IV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157
Score = 23.4 bits (48), Expect(2) = 1.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 283 VRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 435
+R YF L+M+G ++ + +L L S R+ G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233
>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
Length = 1624
Score = 27.9 bits (59), Expect = 5.4
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = -1
Query: 329 FPAMMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMIRLLTTFWMMEPLP---WLSYS 159
FPAM +L NG + +++ SL ++ R R L M P+ W S
Sbjct: 519 FPAMAALTMNGSHAVSLWSYGDGSSLKKHESGPRQFITSRHLYAHTGMFPVTVTVWNRLS 578
Query: 158 KL*RTALS*SPVRMLLYSFSSRSWLEVSADSSTTPALAASMHIANTTRSFIL 3
K TAL+ V++ + + S S L S +S T + + H T S+ +
Sbjct: 579 KKNETALAYVSVQVPVTNISVPSDLTASLGNSVTFTVKITSHETPTNASYYI 630
>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 303 KL*THHGRKLCQDHLQKLQPRSEAR 377
+L HHGR+L +DHL PR R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223
>SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +1
Query: 316 IMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFK 495
++ G Y +++R ++ + G+ T SNER V K + F W VYF
Sbjct: 217 VITGLYSGVVHRLWHRKVP-GNQTTSSNERAKSKKRVLKMLVAIVLAFALCWLPYHVYFF 275
Query: 496 IHNTKY 513
+ N Y
Sbjct: 276 LENYYY 281
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 41 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 181
+PP+R S R+ SR T S+P T + S RA + R KA+
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +2
Query: 92 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 187
TSR NC + P +T ++S +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692
>SB_24957| Best HMM Match : Terminase_4 (HMM E-Value=2.7)
Length = 354
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 468 QGNELPTDEFSMLVYTIAVGNSLIRGIGCGTELQSEVVVSVN 343
Q NE+ +FS + T+ R IGC T Q + VV+ N
Sbjct: 274 QHNEMEISKFSTVTATVLGVQKASRSIGC-TSCQRQTVVTPN 314
>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
Length = 526
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 298 GSTF*QFPVRCRPTA-CSSTPWCSVSC 221
G T + RP A CS +PWC ++C
Sbjct: 270 GDTNNNVTIAARPKAWCSCSPWCVLTC 296
>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 206 LTTFWMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRSWLEVSA 72
+ F ++PL L+YS+ RTA+ P ++ + R+W E A
Sbjct: 185 VVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRNWKEAGA 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,429,645
Number of Sequences: 59808
Number of extensions: 340550
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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