Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310E01f
         (303 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    96   9e-22
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    90   8e-20
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    31   0.028
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   3.2  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.2  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    24   5.6  
SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    24   5.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   5.6  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    23   7.5  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    23   7.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   7.5  
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    23   9.9  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.9  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    23   9.9  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       23   9.9  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   9.9  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    23   9.9  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 96.3 bits (229), Expect = 9e-22
 Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +2

Query: 11  MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 187
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 188 LPPGLQVKEV 217
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 89.8 bits (213), Expect = 8e-20
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +2

Query: 11  MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 187
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 188 LPPGLQVKEV 217
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 31.5 bits (68), Expect = 0.028
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +2

Query: 71  KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 220
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q  EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 94  VLLYFDRFGVFPPRLN*KVFDIFD 23
           VLLY  RF V  P+L   +F  FD
Sbjct: 98  VLLYGPRFSVLSPKLYGGIFITFD 121


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +3

Query: 105 SSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTRLMXXXXXXXXRGGPVPN 284
           S S +      TP SS       N   +YL ++ LKK   V RL            P+  
Sbjct: 159 SYSYYSGPNPATPSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHNHPLSK 218

Query: 285 SPYSES 302
           S   +S
Sbjct: 219 SLEEQS 224


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 6   STCRVKSKISKTF*LRRGGKTPNRSK*RRTLRMSSSRF 119
           ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 273 STYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 118 NLELDILRVLLYFDRFGVFPPRLN*KVFDIFDFTRHV 8
           N+   + R L    +F VF   L+   FD+ D+ +HV
Sbjct: 14  NITFTLCRGLNLQPKFAVFRVPLHVNKFDVRDYLQHV 50


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 26  KDIKDFLIKARRKDAKSVKIKKNPEN 103
           K I+D+L K    ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 17  REIKDIKDFLIKARRKD 67
           R IKD+KD   KA  KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
            Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +2

Query: 41   FLIKARRKDAKSVKIK-----KNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 205
            F+ K R+   KSVKIK     K P+ +K        +  +  TDK    K K      + 
Sbjct: 891  FIEKGRKNQVKSVKIKGMTIIKAPDALK-NANLHNEVIVMQTTDKPIVLKAKSKKIHNIW 949

Query: 206  VKEVK*CN 229
            V+ +K  N
Sbjct: 950  VQAIKQIN 957


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 183  CLSFSAF--SLSVMTRVYRNLEHRTLNLTFSGF 91
            C+ F +     ++ TR++ +L  +TL  T SGF
Sbjct: 988  CIGFKSAMPEYTLRTRIWASLRSQTLYRTISGF 1020


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 225 HHFTSLTWRPGGKLCL 178
           HH T  +  PG KLC+
Sbjct: 202 HHLTDRSQTPGWKLCV 217


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 132 NLEHRTLNLTFSGFFFILT 76
           N E  T++ TFSGF+  LT
Sbjct: 25  NEEGETVDFTFSGFYANLT 43


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 69  PNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRNLSRVYLQVSKL 209
           PNR+     +  + SRF  Q  C P     K  +R++    L V+ L
Sbjct: 41  PNRAIGYAQIECACSRFGLQDKCKPIYGGCKNGVRSIPIQLLDVAGL 87


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 110 FKVRCSRFLYTLVITDKEKAEKLK 181
           FK+    F  +LV+TD +K  K+K
Sbjct: 425 FKISKQNFDESLVLTDPKKKTKIK 448


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 156 SVMTRVYRNLEHRTLNLTFSGFFFILTD 73
           S+M  +  N+ H+T  L   GF   LT+
Sbjct: 253 SLMLALLSNVVHKTTGLVIGGFTLNLTN 280


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 47  IKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 220
           +K +  + K +K+K  P+ +  K   SRF   +    K   +    SL   L   +VK
Sbjct: 1   MKTQTTNQKQLKVKHAPQELSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVK 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,028,728
Number of Sequences: 5004
Number of extensions: 16717
Number of successful extensions: 44
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)