Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   27   7.1  
SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         27   9.4  
SB_32992| Best HMM Match : PAN (HMM E-Value=0.12)                      27   9.4  

>SB_14471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -2

Query: 205 C*VNNRNVNKQKASKSNYDFNYNRIYKHVAVILKIYGYISNLCYFKIFLYLMLDLMNNKY 26
           C +NN   N  + SK+  DF      K   +++ + G    +C+  +F  ++ D++   Y
Sbjct: 220 CAMNNIMQNYSRRSKATIDFLKEA--KAAKMVVLVLGSFL-ICWTPLFCIMIFDVIKENY 276

Query: 25  LNS 17
           +NS
Sbjct: 277 INS 279


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 367  RTVWIKYFWNW 399
            RT++ KYFWNW
Sbjct: 3003 RTLFFKYFWNW 3013


>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 235 HFMANLYLFIC*VNNRNVNKQKASKSNYDFNYNRIYKHVAVILKIYGYISNL 80
           ++  N+Y  +    + NV   +   + YD N+  I+ +V     +YGY++ L
Sbjct: 135 YYSVNVYYSVTVYYSINVYYSRFKSNPYDLNFGLIFVYVV----LYGYVTEL 182


>SB_32992| Best HMM Match : PAN (HMM E-Value=0.12)
          Length = 87

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 320 CIYFKIT*IYSLNHHCVL--CGLNTFGTGKYYEDNVIAQSPK 439
           C+ ++       N  C+L  CG+N+ G   Y+ D  +AQ  K
Sbjct: 43  CVAYEYEYSAEQNGICLLFNCGINSPGNSLYFRDGFVAQQLK 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,196,358
Number of Sequences: 59808
Number of extensions: 224945
Number of successful extensions: 417
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)