Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    27   6.2  

>Z99277-3|CAB16486.1|  338|Caenorhabditis elegans Hypothetical
           protein Y53C12A.4 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = -2

Query: 184 VNKQKASKSNY-DFNYNRIYKHVAVILKIYGYISNLCYFKIFLYLMLDLMN----NKYLN 20
           + K K   + Y D NY+R +   + +     Y++     K+   L+LD  N    NKY+ 
Sbjct: 195 MTKHKNMCAEYLDNNYDRFFGQYSALTNSENYVTRRQSLKLLGELLLDRHNFSTMNKYIT 254

Query: 19  SPKKKK 2
           SP+  K
Sbjct: 255 SPENLK 260


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 240 FIILWLTCIYLFVKLITEMLTSKKHQKVTTILITTEYTNMLL 115
           F+I   T I L+V   ++M+T+K++  V   LIT    N LL
Sbjct: 172 FVIKESTGIILYVLKFSKMITTKENHSVILDLITFIVLNSLL 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,425,147
Number of Sequences: 27780
Number of extensions: 192766
Number of successful extensions: 448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)