Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS310D12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro...    28   3.3  
At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    28   4.4  

>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
           A-related contains 7 WD-40 repeats (PF00400); similar to
           phytochrome A supressor spa1  (GI:4809171) [Arabidopsis
           thaliana]; contains non-consensus (GC) donor splice
           sites at introns 4 and 6
          Length = 1017

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 397 WKIL*R*CYSTISKIA*CCC--FNLLSSHLYCF 489
           W I  R C  TI  IA  CC  F+  SSHL  F
Sbjct: 824 WNINERNCLGTIRNIANVCCVQFSPQSSHLLAF 856


>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 157 NYDFNYNRIYKHVAVILKIYGYISNLCYFKIFLYLMLDLMNNKYLNSP 14
           N+ + Y      V  I  I G++  L Y   F Y  L   NNK L  P
Sbjct: 167 NWIYRYFTEPHFVHWITWIAGFVQTLLYADFFYYYFLSWKNNKKLQLP 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,388,721
Number of Sequences: 28952
Number of extensions: 162935
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)